Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0122
         (621 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   1.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   4.2  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   5.5  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   5.5  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   7.3  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   7.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.7  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   9.7  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = +3

Query: 450 VRRHPSRALAVRVGRTTGIVWTPAT--VSPTPCPSTKDTALP 569
           V     R   +RV R   I+  P++  VSP P P   D A+P
Sbjct: 417 VEEERQREYGIRVERDP-ILTPPSSNPVSPVPSPDPLDLAIP 457


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 334  LRVAPEEHPVLLTEAPLNPKANREKM 411
            LR+ P  H V+ T   +NP  + EK+
Sbjct: 1461 LRLGPCWHAVMTTYPRINPDNHNEKL 1486


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 459 HPSRALAVRVGRTTGIVWTPATVSPTPCPSTKDT 560
           HP    AV +G    I  +PAT +  P   T+++
Sbjct: 429 HPRELEAVNLGSACRIHGSPATTAAPPQLPTEES 462


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 538 RAHLRRIPHSP 570
           RAHL+R+ H P
Sbjct: 507 RAHLKRLDHQP 517


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +3

Query: 423 VRNIQHARHVRRHPSRALAVRVGRTTGIV 509
           ++ IQ   H   H  + + +R+G  TG+V
Sbjct: 564 LKMIQACSHHLTHKGKPIRMRIGIHTGMV 592


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +1

Query: 544 HLRRIPHSPTPFCVWDLARRRP 609
           H++   H+P P C+ +L    P
Sbjct: 324 HIKSPYHTPEPDCIHELLGHMP 345


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 98  GMCKAGFAGD 127
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 157 DRGEHGARSIISCETGLA 104
           D GEH   ++   E GLA
Sbjct: 130 DPGEHNGDTVTDVEAGLA 147


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 157 DRGEHGARSIISCETGLA 104
           D GEH   ++   E GLA
Sbjct: 125 DPGEHNGDTVTDVEAGLA 142


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,679
Number of Sequences: 438
Number of extensions: 5246
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)