Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0121
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    33   0.034
SPCC338.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        26   3.8  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    26   5.1  
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.7  
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ...    25   8.9  
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C...    25   8.9  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    25   8.9  

>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 33.1 bits (72), Expect = 0.034
 Identities = 21/81 (25%), Positives = 36/81 (44%)
 Frame = +3

Query: 99  SKGFPIIEKDVFAFRQPSNRIGVGSLYGLMVFCTSKLEVCYIEANGFYLGKLAVFSETVT 278
           + G P I+  +  ++ P   +     + +   C+  L VC+  A+G ++GK   F    T
Sbjct: 133 ASGIPTIKAILSGYKYPDMNV----FFSIKTLCSKSLAVCFSVASGLWVGKEGPFVHIAT 188

Query: 279 TSLTMTSGYLMERSALRKASS 341
             +     YL+ER A   A S
Sbjct: 189 NII-----YLVERIAPSLADS 204


>SPCC338.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 141

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +3

Query: 54  IIELKENGQAILNGASKGFPIIEKDVFAFRQP-SNRIGVGSLYGLMVFCTSKLEVCYIEA 230
           ++ +  NG+ +L+ AS  F  + K V     P  N   +       +FCTS L  CYI++
Sbjct: 65  MVSVSRNGKQLLSEAS--FFRLGKHVHLNFLPFENTFEMALRNDFQIFCTSILFTCYIQS 122


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1142

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
 Frame = -2

Query: 164  TDSVAWLTESEHILFDDRESFGSSVQNSLSIFF------QFDDSSALIFQNKSLGFSVL 6
            +D + WL   EH + D+ + +  S +N L   +      Q +D    +F+ K + FSVL
Sbjct: 1065 SDFLIWLQHMEHNIHDESKHYLKSEKNFLQSVYSSLSESQVEDYQMELFREKQI-FSVL 1122


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +1

Query: 358 WPAAVHRCKRPNT--PITSCTMHPSPPPAN 441
           +P A    +RPN+  P  + TM+ SPPP++
Sbjct: 72  YPPARPTSQRPNSWQPGNASTMYASPPPSS 101


>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 862

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 13/66 (19%), Positives = 28/66 (42%)
 Frame = -2

Query: 257 RKFTQVEAVSFNVAHLKFRCAEDHETVQ*ANTDSVAWLTESEHILFDDRESFGSSVQNSL 78
           R   + E  S      KF C + HE +   N+D     ++ + +  D+ +S        +
Sbjct: 353 RHIEEFEEASEAFEIYKFLCVKSHERLARKNSDVAGSFSDIKPVFVDEPKSIIEVCSVMM 412

Query: 77  SIFFQF 60
           +++ Q+
Sbjct: 413 TVYAQY 418


>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
           Cct6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +2

Query: 437 RTGLRG-NIAAQDPVIVHGHVAFQTACIHAVTGTDAAKDLHEACDLG 574
           R GLR    A +D  ++ G  AF+ AC   +    AAK++     +G
Sbjct: 391 RDGLRAVKNAVEDNCLIVGAGAFEVACAAHLRNKFAAKEVKGKAKMG 437


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -3

Query: 586 AIPSS*ITSFVQIFSGV 536
           AIPS  +TSF Q+FS V
Sbjct: 254 AIPSQDLTSFCQLFSNV 270


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,649,403
Number of Sequences: 5004
Number of extensions: 54223
Number of successful extensions: 211
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)