Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0121
         (624 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48429| Best HMM Match : PI3_PI4_kinase (HMM E-Value=7.7e-09)        31   0.76 
SB_9683| Best HMM Match : RCSD (HMM E-Value=2.8)                       31   1.0  
SB_42045| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.1  
SB_17044| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_59727| Best HMM Match : C2 (HMM E-Value=0.0018)                     28   7.1  
SB_20002| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_42849| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_32252| Best HMM Match : RVT_1 (HMM E-Value=9.2e-21)                 27   9.4  
SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)                   27   9.4  

>SB_48429| Best HMM Match : PI3_PI4_kinase (HMM E-Value=7.7e-09)
          Length = 1423

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
 Frame = +3

Query: 261  FSETVTTSLTMTSGYLMERSALRKAS---SVTAYRLARSCPQVQAPEHSHHQLHDASLPP 431
            F+  +  S+    GY+  +S L   S   S+T  R  + C   Q  E S  +LH++S PP
Sbjct: 1352 FASALLVSVINGHGYVDSKSKLCDLSPVNSITTGRWQQCCEYRQQSEESARELHESSPPP 1411


>SB_9683| Best HMM Match : RCSD (HMM E-Value=2.8)
          Length = 232

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +3

Query: 264 SETVTTSLTMTSGYLMERSALRKASSVTAYRLARSCPQVQAP-EHSHHQLHDAS 422
           + T+TT+ + TS      S     S   AYR     P  Q+P  HSH  +  +S
Sbjct: 69  TNTMTTTSSFTSKSETRESVTHSMSRFPAYRTVNPTPVTQSPTSHSHESIKTSS 122


>SB_42045| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 356

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = +2

Query: 275 NNEPYDDFRLPNGKICTSESEFGNSVPSGPQLSTGASARTLPSP 406
           N  P DDF + NG+   S+ EFG S   G         R  PSP
Sbjct: 188 NGVPSDDFMMKNGRYARSDREFGKSWSLGGHRRRPCLQRA-PSP 230


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +2

Query: 305  PNGKICTSESEFGNSVPSGPQLSTGASARTLPSPAARCIPPP 430
            P    CT  S     +P+ P+  + A +   P+P + C  PP
Sbjct: 937  PPSSPCTPSSSTAPPLPTNPKSPSEAPSLNNPNPRSSCTTPP 978


>SB_17044| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 386

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +2

Query: 347 SVPSGPQLSTGASARTLPSPAARCIPPPRLRT 442
           SVPSGP+   G      P P    +PP  + T
Sbjct: 120 SVPSGPRAPPGGPGAPPPPPPPAVVPPSAVTT 151


>SB_59727| Best HMM Match : C2 (HMM E-Value=0.0018)
          Length = 482

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +2

Query: 284 PYDDFRLPNGKICTSESEFGNSVPSGPQLSTGASARTLPSPAARCIPPPRLRT 442
           PY    +PNG +  + S    + P+   L        + S  A  +PPP L+T
Sbjct: 146 PYHPLHVPNGNVPVNTSVGYATPPTTTMLPHQPHPNNIYSSPASTMPPPPLQT 198


>SB_20002| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2484

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 18/63 (28%), Positives = 22/63 (34%)
 Frame = +2

Query: 305  PNGKICTSESEFGNSVPSGPQLSTGASARTLPSPAARCIPPPRLRTGLRGNIAAQDPVIV 484
            P  KICTS        P  P  + G +   +P P         L TGL    +   P   
Sbjct: 2302 PTIKICTSTQSLAPPQPESPLSTGGPAIAIIPPPEEMGQRTNSLDTGLSSLSSRSRPNAC 2361

Query: 485  HGH 493
             GH
Sbjct: 2362 GGH 2364


>SB_42849| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 275 NNEPYDDFRLPNGKICTSESEFGNS 349
           NNE +D+   PNGK   S  EF NS
Sbjct: 69  NNEHHDEMTKPNGKHAGSLIEFVNS 93


>SB_32252| Best HMM Match : RVT_1 (HMM E-Value=9.2e-21)
          Length = 1033

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 109 NPLEAPFRIACPFSFNSMIAPLLSSKIRAL 20
           +PL+  +R+  PF F+  I   LS K R L
Sbjct: 603 SPLQGRYRVLLPFRFSGCIMGYLSRKARIL 632


>SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)
          Length = 2200

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 275  NNEPYDDFRLPNGKICTSESEFGNS 349
            NNE +D+   PNGK   S  EF NS
Sbjct: 1817 NNEHHDEMTKPNGKHAGSLIEFVNS 1841


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,917,700
Number of Sequences: 59808
Number of extensions: 454900
Number of successful extensions: 1673
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1669
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)