Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0121
(624 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006671-6|AAF39916.1| 411|Caenorhabditis elegans Hypothetical ... 31 0.88
Z70284-13|CAB54280.1| 639|Caenorhabditis elegans Hypothetical p... 28 6.2
Z70284-12|CAB54278.1| 549|Caenorhabditis elegans Hypothetical p... 28 6.2
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p... 28 6.2
U28741-7|AAO38645.1| 721|Caenorhabditis elegans Synapse defecti... 28 6.2
U28741-6|AAO21428.1| 942|Caenorhabditis elegans Synapse defecti... 28 6.2
U28741-5|AAO38644.1| 987|Caenorhabditis elegans Synapse defecti... 28 6.2
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt... 28 6.2
AF546880-1|AAN38752.1| 942|Caenorhabditis elegans axon identity... 28 6.2
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p... 27 8.2
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p... 27 8.2
U00065-3|AAK68286.3| 981|Caenorhabditis elegans Hypothetical pr... 27 8.2
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ... 27 8.2
>AC006671-6|AAF39916.1| 411|Caenorhabditis elegans Hypothetical
protein K08A2.1 protein.
Length = 411
Score = 30.7 bits (66), Expect = 0.88
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 350 VPSGPQLSTGASARTLPSPAARCIPPPRLRTGLRGNIAAQDPVI 481
VP+ P +++ + A PSP A PPPRL +PV+
Sbjct: 262 VPTAPDVTSESPATPQPSPPAVTPPPPRLLPAATTESHQTEPVL 305
>Z70284-13|CAB54280.1| 639|Caenorhabditis elegans Hypothetical
protein K07F5.13c protein.
Length = 639
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 296 FRLPNGKICTSESEFGNSVPSGPQLSTGASARTLPS 403
F PN +S + FG++ PS P + A A + PS
Sbjct: 16 FPTPNAPTTSSGTLFGSTTPSKPLFGSTAQASSTPS 51
>Z70284-12|CAB54278.1| 549|Caenorhabditis elegans Hypothetical
protein K07F5.13b protein.
Length = 549
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 296 FRLPNGKICTSESEFGNSVPSGPQLSTGASARTLPS 403
F PN +S + FG++ PS P + A A + PS
Sbjct: 16 FPTPNAPTTSSGTLFGSTTPSKPLFGSTAQASSTPS 51
>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
protein F41G3.12 protein.
Length = 1483
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -2
Query: 476 QGPERRYSP-EDLFAGGGEGCIVQLVMGV 393
+GP ++ +P EDL G GE C+V + G+
Sbjct: 209 KGPCKKRNPCEDLRCGPGEDCVVNQINGI 237
>U28741-7|AAO38645.1| 721|Caenorhabditis elegans Synapse defective
protein 1, isoformc protein.
Length = 721
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/61 (27%), Positives = 32/61 (52%)
Frame = +2
Query: 299 RLPNGKICTSESEFGNSVPSGPQLSTGASARTLPSPAARCIPPPRLRTGLRGNIAAQDPV 478
R+P ++ ++ S S P +ST A TLP ++ +PPP + + +A+DP+
Sbjct: 65 RVPPPRLASATVRRTESFNSAPGVSTSAPMYTLPR-SSTAVPPPDILGSI--PYSARDPL 121
Query: 479 I 481
+
Sbjct: 122 M 122
>U28741-6|AAO21428.1| 942|Caenorhabditis elegans Synapse defective
protein 1, isoformb protein.
Length = 942
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/61 (27%), Positives = 32/61 (52%)
Frame = +2
Query: 299 RLPNGKICTSESEFGNSVPSGPQLSTGASARTLPSPAARCIPPPRLRTGLRGNIAAQDPV 478
R+P ++ ++ S S P +ST A TLP ++ +PPP + + +A+DP+
Sbjct: 263 RVPPPRLASATVRRTESFNSAPGVSTSAPMYTLPR-SSTAVPPPDILGSI--PYSARDPL 319
Query: 479 I 481
+
Sbjct: 320 M 320
>U28741-5|AAO38644.1| 987|Caenorhabditis elegans Synapse defective
protein 1, isoforma protein.
Length = 987
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/61 (27%), Positives = 32/61 (52%)
Frame = +2
Query: 299 RLPNGKICTSESEFGNSVPSGPQLSTGASARTLPSPAARCIPPPRLRTGLRGNIAAQDPV 478
R+P ++ ++ S S P +ST A TLP ++ +PPP + + +A+DP+
Sbjct: 331 RVPPPRLASATVRRTESFNSAPGVSTSAPMYTLPR-SSTAVPPPDILGSI--PYSARDPL 387
Query: 479 I 481
+
Sbjct: 388 M 388
>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
protein) homologfamily member protein.
Length = 1473
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -2
Query: 476 QGPERRYSP-EDLFAGGGEGCIVQLVMGV 393
+GP ++ +P EDL G GE C+V + G+
Sbjct: 217 KGPCKKRNPCEDLRCGPGEDCVVNQINGI 245
>AF546880-1|AAN38752.1| 942|Caenorhabditis elegans axon identity
specification proteinSYD-1 protein.
Length = 942
Score = 27.9 bits (59), Expect = 6.2
Identities = 17/61 (27%), Positives = 32/61 (52%)
Frame = +2
Query: 299 RLPNGKICTSESEFGNSVPSGPQLSTGASARTLPSPAARCIPPPRLRTGLRGNIAAQDPV 478
R+P ++ ++ S S P +ST A TLP ++ +PPP + + +A+DP+
Sbjct: 263 RVPPPRLASATVRRTESFNSAPGVSTSAPMYTLPR-SSTAVPPPDILGSI--PYSARDPL 319
Query: 479 I 481
+
Sbjct: 320 M 320
>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
protein 2, isoform c protein.
Length = 1926
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = +2
Query: 344 NSVPSGPQLSTGASARTLPSPAARCIPPPRLRT 442
N PS P+ + A A PSPA R PPR RT
Sbjct: 1630 NRSPSSPRYRSMARASP-PSPAERYGHPPRYRT 1661
>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
protein 2, isoform b protein.
Length = 2027
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = +2
Query: 344 NSVPSGPQLSTGASARTLPSPAARCIPPPRLRT 442
N PS P+ + A A PSPA R PPR RT
Sbjct: 1731 NRSPSSPRYRSMARASP-PSPAERYGHPPRYRT 1762
>U00065-3|AAK68286.3| 981|Caenorhabditis elegans Hypothetical
protein D1044.8 protein.
Length = 981
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 228 ANGFY-LGKLAVFSETVTTSLTMTSGYLMERSALR 329
ANG Y LGKL + VTT T+ S L++ S R
Sbjct: 342 ANGVYILGKLLAIKKNVTTDETIDSWDLLQCSIFR 376
>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
activated calciumchannel alpha-1 subunit protein.
Length = 2027
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = +2
Query: 344 NSVPSGPQLSTGASARTLPSPAARCIPPPRLRT 442
N PS P+ + A A PSPA R PPR RT
Sbjct: 1731 NRSPSSPRYRSMARASP-PSPAERYGHPPRYRT 1762
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,170,134
Number of Sequences: 27780
Number of extensions: 332629
Number of successful extensions: 1266
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1264
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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