Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0121
         (624 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    24   1.4  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    22   4.2  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   4.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   5.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.6  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 91  TELPKDSRSSKRMCSLSVNQATESVLAHCTVSWSSAH 201
           T L  DSRS++RM + SVN     +L    + W   H
Sbjct: 272 TVLWLDSRSTERMIAASVNLICH-ILCMSDLHWQLPH 307


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 44  ERSYHRIERKWTGYSERSFQRIPD 115
           E+  ++ ERK+  Y ERS +R  D
Sbjct: 46  EQKSYKNERKYRKYRERSKERSRD 69


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 44  ERSYHRIERKWTGYSERSFQRIPD 115
           E+  ++ ERK+  Y ERS +R  D
Sbjct: 46  EQKSYKNERKYRKYRERSKERSRD 69


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 459 SPLRTLSLFMDMSPFRQRVF 518
           SP+R  +LF++M+    R+F
Sbjct: 261 SPVRKATLFLNMASVFMRIF 280


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 401  SPAARCIPPPRL 436
            +P  RC PPPR+
Sbjct: 1696 APNRRCPPPPRM 1707



 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +1

Query: 391  NTPITSCTMHPSPPPAN 441
            N P++     P PPP N
Sbjct: 1850 NIPVSGSPEPPPPPPRN 1866


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,253
Number of Sequences: 438
Number of extensions: 3911
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)