Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0120
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces pombe...    50   3e-07
SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-...    30   0.29 
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p...    29   0.67 
SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces pom...    28   1.5  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    27   3.6  
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase...    27   3.6  
SPAC8F11.06 |||nuclear envelope protein |Schizosaccharomyces pom...    26   6.2  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    25   8.2  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    25   8.2  

>SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 346

 Score = 50.0 bits (114), Expect = 3e-07
 Identities = 27/69 (39%), Positives = 44/69 (63%)
 Frame = +3

Query: 303 LTGFGGLKTVKILKKPEPTVGEGEVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFEC 482
           ++GF  LK  +  + P+  +  GEVL+++KA  LN++DLI+ +G    P + P + G + 
Sbjct: 11  ISGFDQLKPEEY-EVPQK-LNPGEVLVKLKAASLNYRDLIITKGLYPLPLQLPVVPGSDG 68

Query: 483 AGEIEQVGE 509
           AG IE+VGE
Sbjct: 69  AGIIEKVGE 77


>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
           oxidoreductase/ARE-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 329

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +2

Query: 518 NFKVGDQVVALPEYRAWAELVSVPAQYVYALPE 616
           +FKVGD+VV L  + A+A+  +VP   V  + E
Sbjct: 79  DFKVGDRVVYLTPFGAYAQYTNVPTTLVSKVSE 111


>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 360

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = +3

Query: 372 EVLIRVKACGLNFQDLIV-RQGAI-DSPPKTPFILGFECAGEIEQVGE 509
           +V + +KA G+   D+   ++G I D   K P ILG E AG + +VG+
Sbjct: 31  QVKVAIKATGICGSDVHYWKEGGIGDFILKKPMILGHESAGVVVEVGK 78


>SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 243 KIYREKKDETPPPKEMRAVVLTGFGGLKTVKILKKPEPTV 362
           ++ +E++ + P P E+R   L   GG K  ++   P PT+
Sbjct: 5   QLNQEEESKCPVPPEVRDAWLKSHGGKKPSEVHDTPHPTM 44


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +3

Query: 507 EMSPILRWATKWWLSPSTALGPSWCLYRPSTCTRCPKECLPW 632
           ++ P+LR+  ++WL+        +  Y PST +   K   PW
Sbjct: 160 KVRPLLRFLIEFWLNGVVGTPEDFVSYLPSTDSNDKKFRKPW 201


>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 372 EVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVGE 509
           EV ++V    +   D     G +D     P +LG E AG +E +GE
Sbjct: 36  EVRVKVDWSAVCHTDAYTLSG-VDPEGAFPIVLGHEGAGIVESIGE 80


>SPAC8F11.06 |||nuclear envelope protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 297

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = +1

Query: 220 TPQEETPEKSTERKRMRPHRPRKCAP*YLPASGVSRPLRYSKNLSRPLVRARS 378
           +P E+  +KST R+++R  +P   +      S  +R L    N S  +++A +
Sbjct: 50  SPDEKNLKKSTVRRKLRKSKPNSSSN---QVSSRTRALTKRSNSSNAIIKANN 99


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = -3

Query: 618 PSGS-AYTYWAGTDT--SSAQARYSGRATTWSPT 526
           P G  A+ +W+ + +  +S+ A YSG   T+SPT
Sbjct: 388 PRGQKAWEWWSASYSLFTSSNATYSGEQKTYSPT 421


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 389 ESLRPKLPRFD-SSSGRHRLSTEDSFHL 469
           +S R  L  F  SS+ RH++STE  FH+
Sbjct: 216 QSFRGPLEPFKYSSTTRHKVSTESIFHV 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,886,318
Number of Sequences: 5004
Number of extensions: 60453
Number of successful extensions: 159
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)