Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0120
(719 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g21580.1 68417.m03122 oxidoreductase, zinc-binding dehydrogen... 56 2e-08
At1g23740.1 68414.m02996 oxidoreductase, zinc-binding dehydrogen... 49 4e-06
At5g51970.2 68418.m06450 sorbitol dehydrogenase, putative / L-id... 47 1e-05
At5g51970.1 68418.m06449 sorbitol dehydrogenase, putative / L-id... 47 1e-05
At5g61510.1 68418.m07718 NADP-dependent oxidoreductase, putative... 46 3e-05
At3g15090.1 68416.m01908 oxidoreductase, zinc-binding dehydrogen... 45 4e-05
At3g45770.1 68416.m04948 oxidoreductase, zinc-binding dehydrogen... 44 1e-04
At5g63620.2 68418.m07988 oxidoreductase, zinc-binding dehydrogen... 40 0.002
At5g63620.1 68418.m07987 oxidoreductase, zinc-binding dehydrogen... 40 0.002
At4g13010.1 68417.m02030 oxidoreductase, zinc-binding dehydrogen... 37 0.012
At1g49670.1 68414.m05570 ARP protein (REF) identical to ARP prot... 35 0.062
At3g45770.2 68416.m04947 oxidoreductase, zinc-binding dehydrogen... 33 0.25
At1g64710.1 68414.m07337 alcohol dehydrogenase, putative similar... 31 0.58
At3g56460.1 68416.m06279 oxidoreductase, zinc-binding dehydrogen... 31 1.0
At2g22840.1 68415.m02712 expressed protein identical to transcri... 30 1.8
At3g06790.2 68416.m00807 plastid developmental protein DAG, puta... 29 2.3
At3g06790.1 68416.m00806 plastid developmental protein DAG, puta... 29 2.3
At5g43940.1 68418.m05376 alcohol dehydrogenase class III / gluta... 29 3.1
At3g17460.1 68416.m02229 PHD finger family protein contains Pfam... 29 4.1
At5g64840.1 68418.m08157 ABC transporter family protein 28 7.2
At5g42250.1 68418.m05143 alcohol dehydrogenase, putative similar... 27 9.5
At4g22110.2 68417.m03197 alcohol dehydrogenase, putative similar... 27 9.5
At4g22110.1 68417.m03196 alcohol dehydrogenase, putative similar... 27 9.5
At2g40810.2 68415.m05035 WD-40 repeat protein family similar to ... 27 9.5
At2g40810.1 68415.m05034 WD-40 repeat protein family similar to ... 27 9.5
>At4g21580.1 68417.m03122 oxidoreductase, zinc-binding dehydrogenase
family protein Pig3 Homo sapiens, PID:G2754812; contains
Pfam zinc-binding dehydrogenase domain PF00107
Length = 325
Score = 56.4 bits (130), Expect = 2e-08
Identities = 31/81 (38%), Positives = 47/81 (58%)
Frame = +3
Query: 288 MRAVVLTGFGGLKTVKILKKPEPTVGEGEVLIRVKACGLNFQDLIVRQGAIDSPPKTPFI 467
M+A+V++ G + +++ +P V + EVLIRV A LN D + R G + PP +
Sbjct: 1 MKAIVISEPGKPEVLQLRDVADPEVKDDEVLIRVLATALNRADTLQRLGLYNPPPGSSPY 60
Query: 468 LGFECAGEIEQVGEMSPILRW 530
LG EC+G IE VG+ + RW
Sbjct: 61 LGLECSGTIESVGK--GVSRW 79
Score = 44.0 bits (99), Expect = 1e-04
Identities = 24/58 (41%), Positives = 34/58 (58%)
Frame = +2
Query: 464 HLGLRMRW*NRASWRNVTNFKVGDQVVALPEYRAWAELVSVPAQYVYALPEGMSALDA 637
+LGL + + V+ +KVGDQV AL +AE VSVPA ++ +P G+S DA
Sbjct: 60 YLGLECSGTIESVGKGVSRWKVGDQVCALLSGGGYAEKVSVPAGQIFPIPAGISLKDA 117
>At1g23740.1 68414.m02996 oxidoreductase, zinc-binding dehydrogenase
family protein contains Pfam profile PF00107:
oxidoreductase, zinc-binding dehydrogenase family
Length = 386
Score = 48.8 bits (111), Expect = 4e-06
Identities = 32/80 (40%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Frame = +3
Query: 279 PKEMRAVVLTGFGGLKTVKILKK-PEPTVGEGEVLIRVKACGLNFQDLIVRQG---AIDS 446
PKEM+A V + +GG+ +K+ P + E +VLI+V A LN D RQG A DS
Sbjct: 75 PKEMKAWVYSDYGGVDVLKLESNIVVPEIKEDQVLIKVVAAALNPVDAKRRQGKFKATDS 134
Query: 447 PPKTPFILGFECAGEIEQVG 506
P P + G++ AG + +VG
Sbjct: 135 P--LPTVPGYDVAGVVVKVG 152
>At5g51970.2 68418.m06450 sorbitol dehydrogenase, putative /
L-iditol 2-dehydrogenase, putative similar to
NAD-dependent sorbitol dehydrogenase from Malus x
domestica [gi:4519539]
Length = 364
Score = 47.2 bits (107), Expect = 1e-05
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Frame = +3
Query: 318 GLKTVKILKKPEPTVGEGEVLIRVKACGLNFQDL--IVRQGAIDSPPKTPFILGFECAGE 491
G+ T+KI P+VG +V +R+KA G+ D+ + D K P ++G ECAG
Sbjct: 25 GINTLKIQPFLLPSVGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGI 84
Query: 492 IEQVGE 509
IE+VGE
Sbjct: 85 IEEVGE 90
>At5g51970.1 68418.m06449 sorbitol dehydrogenase, putative /
L-iditol 2-dehydrogenase, putative similar to
NAD-dependent sorbitol dehydrogenase from Malus x
domestica [gi:4519539]
Length = 364
Score = 47.2 bits (107), Expect = 1e-05
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Frame = +3
Query: 318 GLKTVKILKKPEPTVGEGEVLIRVKACGLNFQDL--IVRQGAIDSPPKTPFILGFECAGE 491
G+ T+KI P+VG +V +R+KA G+ D+ + D K P ++G ECAG
Sbjct: 25 GINTLKIQPFLLPSVGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGI 84
Query: 492 IEQVGE 509
IE+VGE
Sbjct: 85 IEEVGE 90
>At5g61510.1 68418.m07718 NADP-dependent oxidoreductase, putative
similar to zeta-crystallin homolog TED2 from Zinnia
elegans [gi:531096]; contains Pfam zinc-binding
dehydrogenase domain PF00107
Length = 406
Score = 45.6 bits (103), Expect = 3e-05
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Frame = +3
Query: 264 DETPPPKEMRAVVLTGFGGLKTVKILKKPEPTVGE---GEVLIRVKACGLNFQDLIVRQG 434
+E+ K ++ + + GG ++LK + VGE GE+ ++ KA GLNF D+ R+G
Sbjct: 76 EESSEKKMVKGIRVYEHGG---PEVLKWEDVEVGEPKEGEIRVKNKAIGLNFIDVYFRKG 132
Query: 435 AIDSPPKTPFILGFECAGEIEQVG 506
+ P PF G E GE+ VG
Sbjct: 133 -VYKPASMPFTPGMEAVGEVVAVG 155
>At3g15090.1 68416.m01908 oxidoreductase, zinc-binding dehydrogenase
family protein low similarity to NOGO-interacting
mitochondrial protein from Mus musculus [gi:14522884];
contains Pfam profile: PF00107 zinc-binding
dehydrogenases
Length = 366
Score = 45.2 bits (102), Expect = 4e-05
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Frame = +3
Query: 291 RAVVLTGFGGLKTVKILKK-PEPTVGEGEVLIRVKACGLNFQDLIVRQGAIDS--PPKTP 461
RAV+L FGG + ++ + P P + EVL++ KA +N D +R G S P P
Sbjct: 33 RAVILPRFGGPEVFELRENVPVPNLNPNEVLVKAKAVSVNPLDCRIRAGYGRSVFQPHLP 92
Query: 462 FILGFECAGEIEQVG 506
I+G + +GE+ +G
Sbjct: 93 IIVGRDVSGEVAAIG 107
>At3g45770.1 68416.m04948 oxidoreductase, zinc-binding dehydrogenase
family protein similar to nuclear receptor binding
factor-1 NRBF-1 - Rattus norvegicus, EMBL:AB015724;
contains Pfam zinc-binding dehydrogenase domain PF00107
Length = 375
Score = 43.6 bits (98), Expect = 1e-04
Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 4/137 (2%)
Frame = +3
Query: 270 TPPPKEMRAVVLTGFGGLKTV-KILKKPEPTVGEGEVLIRVKACGLNFQDLIVRQGAIDS 446
+PP K A+V G +V +++ P V E +V +++ A +N D+ +G
Sbjct: 42 SPPSK---AIVYEEHGSPDSVTRLVNLPPVEVKENDVCVKMIAAPINPSDINRIEGVYPV 98
Query: 447 PPKTPFILGFECAGEIEQVGEMSPILRWATKWWLSPSTALGPSWCLY---RPSTCTRCPK 617
P P + G+E GE+ VG S + ++ W+ PS +W Y S + K
Sbjct: 99 RPPVPAVGGYEGVGEVYAVG--SNVNGFSPGDWVIPSPPSSGTWQTYVVKEESVWHKIDK 156
Query: 618 ECLPWMLVAITTNYVVA 668
EC IT N + A
Sbjct: 157 ECPMEYAATITVNPLTA 173
>At5g63620.2 68418.m07988 oxidoreductase, zinc-binding dehydrogenase
family protein contains PFAM zinc-binding dehydrogenase
domain PF00107
Length = 427
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/54 (37%), Positives = 31/54 (57%)
Frame = +3
Query: 354 PTVGEGEVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVGEMS 515
P E+LI+ KACG+ DL V +G I P +P ++G E GE+ + G ++
Sbjct: 76 PRPKSNEILIKTKACGVCHSDLHVMKGEI--PFASPCVIGHEITGEVVEHGPLT 127
>At5g63620.1 68418.m07987 oxidoreductase, zinc-binding dehydrogenase
family protein contains PFAM zinc-binding dehydrogenase
domain PF00107
Length = 427
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/54 (37%), Positives = 31/54 (57%)
Frame = +3
Query: 354 PTVGEGEVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVGEMS 515
P E+LI+ KACG+ DL V +G I P +P ++G E GE+ + G ++
Sbjct: 76 PRPKSNEILIKTKACGVCHSDLHVMKGEI--PFASPCVIGHEITGEVVEHGPLT 127
>At4g13010.1 68417.m02030 oxidoreductase, zinc-binding dehydrogenase
family protein low similarity to probable NADP-dependent
oxidoreductase (zeta-crystallin homolog) P1
[SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430];
contains Pfam profile PF00107: oxidoreductase,
zinc-binding dehydrogenase family
Length = 329
Score = 37.1 bits (82), Expect = 0.012
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Frame = +3
Query: 282 KEMRAVVLTGFGG-LKTVKILKKPEPTVGEGEVLIRVKACGLNFQDLIVRQGAIDS--PP 452
K M A+ +GG ++ ++ P PT EV ++++A LN D +++G I P
Sbjct: 4 KLMHALQYNSYGGGAAGLEHVQVPVPTPKSNEVCLKLEATSLNPVDWKIQKGMIRPFLPR 63
Query: 453 KTPFILGFECAGEIEQVG 506
K P I + AGE+ +VG
Sbjct: 64 KFPCIPATDVAGEVVEVG 81
>At1g49670.1 68414.m05570 ARP protein (REF) identical to ARP protein
GB:CAA89858 GI:886434 from [Arabidopsis thaliana];
contains Pfam profile PF00107: oxidoreductase,
zinc-binding dehydrogenase family
Length = 629
Score = 34.7 bits (76), Expect = 0.062
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = +3
Query: 333 KILKKP-EPTVGEGEVLIRVKACGLNFQDLIVRQGAI--DSPPKTPFILGFECAGEIEQV 503
+I++ P + +G +VL+++ G+N D+ G PK PF GFE G I V
Sbjct: 304 RIVRAPLQLPIGPHQVLLKIIYAGVNASDVNFSSGRYFTGGSPKLPFDAGFEGVGLIAAV 363
Query: 504 GE 509
GE
Sbjct: 364 GE 365
>At3g45770.2 68416.m04947 oxidoreductase, zinc-binding dehydrogenase
family protein similar to nuclear receptor binding
factor-1 NRBF-1 - Rattus norvegicus, EMBL:AB015724;
contains Pfam zinc-binding dehydrogenase domain PF00107
Length = 297
Score = 32.7 bits (71), Expect = 0.25
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 3/95 (3%)
Frame = +3
Query: 393 ACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVGEMSPILRWATKWWLSPSTALGP 572
A +N D+ +G P P + G+E GE+ VG S + ++ W+ PS
Sbjct: 3 AAPINPSDINRIEGVYPVRPPVPAVGGYEGVGEVYAVG--SNVNGFSPGDWVIPSPPSSG 60
Query: 573 SWCLY---RPSTCTRCPKECLPWMLVAITTNYVVA 668
+W Y S + KEC IT N + A
Sbjct: 61 TWQTYVVKEESVWHKIDKECPMEYAATITVNPLTA 95
>At1g64710.1 68414.m07337 alcohol dehydrogenase, putative similar to
alcohol dehydrogenase GI:551257 from [Nicotiana tabacum]
Length = 396
Score = 31.5 bits (68), Expect = 0.58
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +3
Query: 372 EVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVGE 509
EV IR+ + DL +G ++ P ILG E AG +E VGE
Sbjct: 52 EVRIRILFTSICHTDLSAWKGENEAQRAYPRILGHEAAGIVESVGE 97
>At3g56460.1 68416.m06279 oxidoreductase, zinc-binding dehydrogenase
family protein low similarity to probable NADP-dependent
oxidoreductase (zeta-crystallin homolog) P1
[SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430],
zeta-crystallin / quinone reductase (NADPH) - Mus
musculus, PIR:A54932; contains Pfam profile PF00107:
oxidoreductase, zinc-binding dehydrogenase family
Length = 348
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +3
Query: 348 PEPTVG-EGEVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVG 506
P P++ + V +RV A LN+ + + G P PFI G + +G ++ +G
Sbjct: 31 PIPSLNSDTSVRVRVIATSLNYANYLQILGKYQEKPPLPFIPGSDYSGIVDAIG 84
>At2g22840.1 68415.m02712 expressed protein identical to
transcription activator GRL1 [Arabidopsis thaliana]
GI:21539880 (unpublished); supporting cDNA
gi|21539879|gb|AY102634.1|
Length = 530
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +3
Query: 72 NSAGGGSLHLQPNATRLDP-PAPYHQND*EYGRRRDSSTGEDPDRKWCY*NTARGNAR 242
NS G GS HL + +DP P + D G++ S PD+K+C + RG R
Sbjct: 179 NSFGWGSFHLGFSGGNMDPEPGRCRRTD---GKKWRCSRDAVPDQKYCERHINRGRHR 233
>At3g06790.2 68416.m00807 plastid developmental protein DAG,
putative similar to DAG protein, chloroplast precursor
[Garden snapdragon] SWISS-PROT:Q38732
Length = 244
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -1
Query: 611 AARTRTGPVQTPARPKRGTRGEPPLGRPP*NW 516
++RT GP RPK G PL P NW
Sbjct: 47 SSRTSLGPCYISTRPKTSGSGYSPLNDPSPNW 78
>At3g06790.1 68416.m00806 plastid developmental protein DAG,
putative similar to DAG protein, chloroplast precursor
[Garden snapdragon] SWISS-PROT:Q38732
Length = 244
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -1
Query: 611 AARTRTGPVQTPARPKRGTRGEPPLGRPP*NW 516
++RT GP RPK G PL P NW
Sbjct: 47 SSRTSLGPCYISTRPKTSGSGYSPLNDPSPNW 78
>At5g43940.1 68418.m05376 alcohol dehydrogenase class III /
glutathione-dependent formaldehyde dehydrogenase /
GSH-FDH (ADHIII) identical to gi:1143388
Length = 379
Score = 29.1 bits (62), Expect = 3.1
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = +3
Query: 369 GEVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVGE 509
GEV I++ L D G D P ILG E AG +E VGE
Sbjct: 35 GEVRIKILYTALCHTDAYTWSGK-DPEGLFPCILGHEAAGIVESVGE 80
>At3g17460.1 68416.m02229 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 198
Score = 28.7 bits (61), Expect = 4.1
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Frame = +3
Query: 243 KIYREKKDETP-PPKEMRAVVLTGFGGL----KTVKILKKP--EPTVGEGEVLIRVKACG 401
++ + DETP PK A+V G + K V +LK+ + + +R K
Sbjct: 117 RVNEDVPDETPLTPKSAMALVAAGNISVANMNKAVALLKEEALKKIIAAKTAKLRAKGAL 176
Query: 402 LNFQDLIVRQGAIDSPPK 455
N QD+++RQ + K
Sbjct: 177 TNLQDIVIRQSKVTGKRK 194
>At5g64840.1 68418.m08157 ABC transporter family protein
Length = 692
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -2
Query: 421 IKSWKFRPQAFTRIRTSPSPTVGSGFLSILTVLRPPKPVST 299
+ S R FT +RTSP P S F+ I ++ P + +ST
Sbjct: 7 LHSLDLRSTFFTGLRTSPIP---SNFIKISSISNPRRDIST 44
>At5g42250.1 68418.m05143 alcohol dehydrogenase, putative similar to
alcohol dehydrogenase ADH GI:7705214 from [Lycopersicon
esculentum]; contains Pfam zinc-binding dehydrogenase
domain PF00107
Length = 390
Score = 27.5 bits (58), Expect = 9.5
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Frame = +3
Query: 372 EVLIRVKACGLNFQDLIVRQGAIDSPPKT-PFILGFECAGEIEQVGE-MSPILRWATKW- 542
EV IR+ L D+ + + PP P ILG E G +E VGE + ++ T
Sbjct: 45 EVRIRIICTALCHSDVTFWK--LQVPPACFPRILGHEAIGVVESVGENVKEVVEGDTVLP 102
Query: 543 WLSPSTALGPSWCLYRPSTCTRCPKECLPWM 635
P ++ + C++ P + PWM
Sbjct: 103 TFMPDCGDCVDCKSHKSNLCSKFPFKVSPWM 133
>At4g22110.2 68417.m03197 alcohol dehydrogenase, putative similar to
alcohol dehydrogenase ADH GI:7705214 from [Lycopersicon
esculentum]; contains Pfam zinc-binding dehydrogenase
domain PF00107
Length = 389
Score = 27.5 bits (58), Expect = 9.5
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +3
Query: 372 EVLIRVKACGLNFQDLIVRQGAIDSPP--KTPFILGFECAGEIEQVGE 509
EV I++ L D V IDS P + P ILG E G IE +GE
Sbjct: 43 EVRIKIICTSLCHTD--VSFSKIDSGPLARFPRILGHEAVGVIESIGE 88
>At4g22110.1 68417.m03196 alcohol dehydrogenase, putative similar to
alcohol dehydrogenase ADH GI:7705214 from [Lycopersicon
esculentum]; contains Pfam zinc-binding dehydrogenase
domain PF00107
Length = 389
Score = 27.5 bits (58), Expect = 9.5
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +3
Query: 372 EVLIRVKACGLNFQDLIVRQGAIDSPP--KTPFILGFECAGEIEQVGE 509
EV I++ L D V IDS P + P ILG E G IE +GE
Sbjct: 43 EVRIKIICTSLCHTD--VSFSKIDSGPLARFPRILGHEAVGVIESIGE 88
>At2g40810.2 68415.m05035 WD-40 repeat protein family similar to
Gsa12p(GI:18307769)[Pichia pastoris]; contains 3 Pfam
PF00400: WD domain, G-beta repeats
Length = 393
Score = 27.5 bits (58), Expect = 9.5
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = -2
Query: 622 HSFGQRVHVLGRYRHQLGPSAVLGESHHLVAHLKIGDISPTCSISPAHSKPKMKGV 455
H F RV V+G + A+L + ++ ++ G +SPT +P S M+GV
Sbjct: 271 HIFSLRVRVVGEDSYSTENGALLTQQNY--SNSLQGLVSPTIGTNPGSSLSFMRGV 324
>At2g40810.1 68415.m05034 WD-40 repeat protein family similar to
Gsa12p(GI:18307769)[Pichia pastoris]; contains 3 Pfam
PF00400: WD domain, G-beta repeats
Length = 393
Score = 27.5 bits (58), Expect = 9.5
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = -2
Query: 622 HSFGQRVHVLGRYRHQLGPSAVLGESHHLVAHLKIGDISPTCSISPAHSKPKMKGV 455
H F RV V+G + A+L + ++ ++ G +SPT +P S M+GV
Sbjct: 271 HIFSLRVRVVGEDSYSTENGALLTQQNY--SNSLQGLVSPTIGTNPGSSLSFMRGV 324
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,220,496
Number of Sequences: 28952
Number of extensions: 368376
Number of successful extensions: 1168
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -