Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0119
         (629 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022976-7|AAC69086.1|  441|Caenorhabditis elegans Hypothetical ...    29   2.1  
Z22177-12|CAA80152.1|  974|Caenorhabditis elegans Hypothetical p...    29   2.7  
Z19155-5|CAA79562.1|  974|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z92833-2|CAB07379.1|  891|Caenorhabditis elegans Hypothetical pr...    29   3.6  

>AF022976-7|AAC69086.1|  441|Caenorhabditis elegans Hypothetical
           protein R11G11.12 protein.
          Length = 441

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -1

Query: 323 VKRRPVNCNTT--HYRANWVPGPPSAAADRFFFLRLR 219
           V RR V  + T  H+ ANW+ G PSA  +RF  +  R
Sbjct: 237 VTRRGVMMDMTNVHFDANWLSGYPSAELNRFLHVPSR 273


>Z22177-12|CAA80152.1|  974|Caenorhabditis elegans Hypothetical
           protein F54G8.4 protein.
          Length = 974

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = +3

Query: 126 VAVSKSRPFWLSLCSPTCPRETGKASGPPVNPQS*KKKTVXXXXXXARYPIRPI 287
           V  +KSRP  L + +   PR    AS PP+ PQS ++         A  P  PI
Sbjct: 442 VEPTKSRPTSLIVPNTETPRTVSPASKPPLPPQSVERVERTEDASPAPLPQLPI 495


>Z19155-5|CAA79562.1|  974|Caenorhabditis elegans Hypothetical
           protein F54G8.4 protein.
          Length = 974

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = +3

Query: 126 VAVSKSRPFWLSLCSPTCPRETGKASGPPVNPQS*KKKTVXXXXXXARYPIRPI 287
           V  +KSRP  L + +   PR    AS PP+ PQS ++         A  P  PI
Sbjct: 442 VEPTKSRPTSLIVPNTETPRTVSPASKPPLPPQSVERVERTEDASPAPLPQLPI 495


>Z92833-2|CAB07379.1|  891|Caenorhabditis elegans Hypothetical
           protein F38A6.2 protein.
          Length = 891

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -2

Query: 466 LPFAIQAAQLLGRAIGAGLFAITPAGE--RGMCCKAIKLGNARV 341
           L F+  +  L G++IGA L   T AGE   G   K +K G++RV
Sbjct: 761 LDFSSDSQYLRGQSIGAHLLFWTKAGEICDGTSVKDVKWGSSRV 804


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,936,791
Number of Sequences: 27780
Number of extensions: 291737
Number of successful extensions: 656
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)