Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0119
         (629 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g62940.1 68418.m07897 Dof-type zinc finger domain-containing ...    30   1.1  
At2g18760.1 68415.m02184 SNF2 domain-containing protein / helica...    28   5.9  
At1g27020.1 68414.m03294 expressed protein                             27   7.8  

>At5g62940.1 68418.m07897 Dof-type zinc finger domain-containing
           protein Dof zinc finger protein, Oryza sativa,
           EMBL:AB028129
          Length = 372

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
 Frame = -1

Query: 356 G*RQGFPSHDVVKRRPVNCNTTHYRANWVPGPPSAAADRFFFLRLRVYWWPGGLSSFTRT 177
           G R+  P HD  ++ P  C +TH +  +     S +  R+F    R YW  GG       
Sbjct: 61  GGRRLRPPHDHPQKCP-RCESTHTKFCYYNNY-SLSQPRYFCKTCRRYWTKGGTLRNIPV 118

Query: 176 GG--RAKAQPEGAGFANSYPSASK 111
           GG  R   +P  +  ++S  S  K
Sbjct: 119 GGGCRKNKKPSSSNSSSSTSSGKK 142


>At2g18760.1 68415.m02184 SNF2 domain-containing protein / helicase
           domain-containing protein similar to SP|Q03468 Excision
           repair protein ERCC-6 (Cockayne syndrome protein CSB)
           {Homo sapiens}; contains PFam profiles PF00271: Helicase
           conserved C-terminal domain, PF00176: SNF2 family
           N-terminal domain
          Length = 1187

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +3

Query: 282 PIVSRITIHWPSFYNVVTGKTLALPNLIALQHIPLSPAGVIAKRPAPIALPNSCA 446
           PI +++T  W  F  V  GK   LP   A   +P++  G     P  ++    CA
Sbjct: 576 PIQNKLTELWSLFDFVFPGKLGVLPVFEAEFSVPITVGGYANASPLQVSTAYRCA 630


>At1g27020.1 68414.m03294 expressed protein
          Length = 308

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 335 WENPGVTQLNRLAAHPPFASW 397
           WE P  T  N+LA    FA+W
Sbjct: 163 WEKPTSTDFNQLAKESEFAAW 183


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,389,126
Number of Sequences: 28952
Number of extensions: 276418
Number of successful extensions: 614
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)