Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0118
         (762 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q22SL6 Cluster: Cyclic nucleotide-binding domain contai...    36   0.83 
UniRef50_Q8IEN1 Cluster: Putative uncharacterized protein MAL13P...    35   1.9  
UniRef50_Q4UAE7 Cluster: Putative uncharacterized protein; n=1; ...    34   3.3  
UniRef50_Q6CUG4 Cluster: Similarity; n=1; Kluyveromyces lactis|R...    33   5.8  
UniRef50_UPI00006CE5E7 Cluster: hypothetical protein TTHERM_0014...    33   7.7  
UniRef50_Q5WL30 Cluster: Two-component sensor histidine kinase; ...    33   7.7  
UniRef50_Q7RIF7 Cluster: Putative uncharacterized protein PY0366...    33   7.7  
UniRef50_Q7U351 Cluster: Inner membrane protein oxaA; n=42; Gamm...    33   7.7  

>UniRef50_Q22SL6 Cluster: Cyclic nucleotide-binding domain containing
            protein; n=1; Tetrahymena thermophila SB210|Rep: Cyclic
            nucleotide-binding domain containing protein -
            Tetrahymena thermophila SB210
          Length = 1749

 Score = 36.3 bits (80), Expect = 0.83
 Identities = 27/103 (26%), Positives = 43/103 (41%)
 Frame = +1

Query: 232  INLNDFKLAVTYVNANFNTSPLHTFNTEITIKSVHEHDYYNRQNNLRLYTLAIYRYEINS 411
            IN  D +  +   N N N+ P + F  +   +      +Y  Q NL+L     ++Y    
Sbjct: 1647 INEQDVQNQIYLNNCNNNSIPQNNFY-DYNFEKPQNFKFYYSQGNLKLQIFRFFQYMQGQ 1705

Query: 412  YKI*LVITMIYTVEYKLQFINIPINKHSKLFNRKNEIYFNNSF 540
             K  + +     V  KLQ+           F++KN+ YF NSF
Sbjct: 1706 NKKFIYMLQNLRVNLKLQYFTSNFFN----FHKKNKKYFLNSF 1744


>UniRef50_Q8IEN1 Cluster: Putative uncharacterized protein MAL13P1.39;
            n=1; Plasmodium falciparum 3D7|Rep: Putative
            uncharacterized protein MAL13P1.39 - Plasmodium
            falciparum (isolate 3D7)
          Length = 6088

 Score = 35.1 bits (77), Expect = 1.9
 Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 5/112 (4%)
 Frame = +1

Query: 202  MYIKLVED**INLNDFKLAVTYVNAN----FNTSPLHTFNTEITIKSVHEHDYYNRQNNL 369
            +Y  L+ +  +N+ +   ++ Y+  N    F+T+ L+T       K+++ HD  +  N  
Sbjct: 2450 IYFSLINNM-MNIYNMIFSIFYLRLNAFSDFSTNKLNTHIYNFNKKNIYSHDDTHIYNIF 2508

Query: 370  RLYTLAIYRYEINSYKI*LVITMIYTVEYKLQFINIPIN-KHSKLFNRKNEI 522
              ++   YRY  +   I  V T  + +   L  INI     H K   RK  I
Sbjct: 2509 NWFSFINYRYGCSYEFINFVFTSFHVITNFLVNINISTEMSHRKYIGRKKNI 2560


>UniRef50_Q4UAE7 Cluster: Putative uncharacterized protein; n=1;
           Theileria annulata|Rep: Putative uncharacterized protein
           - Theileria annulata
          Length = 510

 Score = 34.3 bits (75), Expect = 3.3
 Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
 Frame = +1

Query: 388 IYRYEINSYKI*LVITMIYTVEYKLQFINIPI--NKHSKLFNRKNEIY 525
           IY Y++  YKI + I  IYT +YKL  INI +  N  + + N+ +E++
Sbjct: 145 IYGYDLLKYKIIIKIYQIYT-KYKLNLINITVLYNILNSITNKTDELF 191


>UniRef50_Q6CUG4 Cluster: Similarity; n=1; Kluyveromyces lactis|Rep:
           Similarity - Kluyveromyces lactis (Yeast) (Candida
           sphaerica)
          Length = 130

 Score = 33.5 bits (73), Expect = 5.8
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -1

Query: 243 IQIYLLILDQFYIHHESNSKIIVTTHF 163
           I IYLL L   Y HH S+  ++VTT+F
Sbjct: 7   ILIYLLFLSALYSHHGSHLSVLVTTYF 33


>UniRef50_UPI00006CE5E7 Cluster: hypothetical protein TTHERM_00146180;
            n=1; Tetrahymena thermophila SB210|Rep: hypothetical
            protein TTHERM_00146180 - Tetrahymena thermophila SB210
          Length = 2386

 Score = 33.1 bits (72), Expect = 7.7
 Identities = 21/62 (33%), Positives = 31/62 (50%)
 Frame = +1

Query: 232  INLNDFKLAVTYVNANFNTSPLHTFNTEITIKSVHEHDYYNRQNNLRLYTLAIYRYEINS 411
            I + D+ L   Y N   N S L + N + T+ S+ +      QNN  L +L+IY    +S
Sbjct: 1691 IPVTDYSLN-NYWNILLNVSDLRSINFQSTLNSLTQVYPAQVQNNQELNSLSIYSDSFSS 1749

Query: 412  YK 417
            YK
Sbjct: 1750 YK 1751


>UniRef50_Q5WL30 Cluster: Two-component sensor histidine kinase;
           n=1; Bacillus clausii KSM-K16|Rep: Two-component sensor
           histidine kinase - Bacillus clausii (strain KSM-K16)
          Length = 581

 Score = 33.1 bits (72), Expect = 7.7
 Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
 Frame = +1

Query: 322 IKSVHEHDYYNRQ-NNLR--LYTLAIYRYEINSYKI*LVITMIYTVEYKLQFIN-IPINK 489
           I + HEH  YNRQ NNL   L+ + +    I+S  I +     +  +Y ++F++ I ++ 
Sbjct: 81  INNRHEHFSYNRQRNNLHKYLHQVVLSSSMIDSIDIYMDNPPTFDSQYPIRFLSKIDMHS 140

Query: 490 H--SKLFNRKNEIYFNNSFKLLT 552
           H  +K  N  NE++     K LT
Sbjct: 141 HPKNKEVNEANEVWLGEHDKHLT 163


>UniRef50_Q7RIF7 Cluster: Putative uncharacterized protein PY03666;
            n=7; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
            protein PY03666 - Plasmodium yoelii yoelii
          Length = 2356

 Score = 33.1 bits (72), Expect = 7.7
 Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
 Frame = -3

Query: 187  QNNSDYTFLVLLLYQIVFNGRLLSPN--RSIKLRLLNIFC 74
            +NN+D+ +  LLLY IV++  L+  N   +   RLLN+FC
Sbjct: 1751 KNNNDFNYKFLLLYGIVYDLLLMYGNYLPNFDKRLLNMFC 1790


>UniRef50_Q7U351 Cluster: Inner membrane protein oxaA; n=42;
           Gammaproteobacteria|Rep: Inner membrane protein oxaA -
           Blochmannia floridanus
          Length = 558

 Score = 33.1 bits (72), Expect = 7.7
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +1

Query: 232 INLNDFKLAVTYVNANFNTSPLHTFNTEITIKSVHEHDYYNRQN-NLRLYTLAIYRYEIN 408
           +N ND+ + +TY+  N +T P+H       I+S+H     ++ N +  LYT     Y  +
Sbjct: 181 LNRNDYSIYITYIIDNQSTYPIHIKLYGNLIQSIHSDVIQSKHNDHCPLYTYQEAAYSTD 240

Query: 409 SYK 417
           + K
Sbjct: 241 TEK 243


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 657,173,283
Number of Sequences: 1657284
Number of extensions: 12206517
Number of successful extensions: 26504
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 25393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26499
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 63381147830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)