Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0118
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit...    27   2.9  
SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ...    27   2.9  
SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyce...    27   3.9  

>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
           Rep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 472

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -1

Query: 192 NSKIIVTTHF*CCYCTR*YLTVGFL 118
           +S ++  + F CCYCT+ +L++  L
Sbjct: 411 SSPLLSRSRFICCYCTKPFLSISKL 435


>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 424 LVITMIYTVEYKLQFINIPI 483
           L++ MIYT    LQF+++P+
Sbjct: 86  LLVAMIYTASKALQFLSVPV 105


>SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 462

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = -1

Query: 729 IPIFLGGSFFEISVLFLWAYDAIFNSRW 646
           +P+ L G+FF  + LF++ + A +++ W
Sbjct: 358 VPVILLGTFFFPAGLFIYGWTAQYHTHW 385


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,873,966
Number of Sequences: 5004
Number of extensions: 55712
Number of successful extensions: 116
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)