Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0118
         (762 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0924 + 12429764-12430120,12430562-12430637,12430803-124308...    29   4.0  
12_01_0421 - 3321590-3323692                                           29   5.3  
04_01_0619 - 8125611-8127967,8128449-8130123                           29   5.3  
06_01_0027 - 271199-271424,271628-272095,272721-273018,273133-27...    28   9.3  

>03_02_0924 +
           12429764-12430120,12430562-12430637,12430803-12430849,
           12431850-12431962,12432056-12432129,12432258-12432353,
           12432440-12432559,12432660-12432893,12433486-12433634,
           12434145-12434301,12434387-12434542,12435359-12435735,
           12435871-12436020,12437071-12437253,12437440-12437643,
           12437869-12437975,12438253-12438406,12438796-12438917,
           12439541-12439787
          Length = 1040

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 617 LRTPRASVGGHLELKMASYAHKKSTLISKKL 709
           L T  + VG +LELK+  Y  K STL+S  L
Sbjct: 658 LETSMSVVGSNLELKLYGYNDKLSTLLSSIL 688


>12_01_0421 - 3321590-3323692
          Length = 700

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
 Frame = +3

Query: 588 SQTLILNNNNYVHRARRSA----AILN*KWRRTPTKKAHLFRKNYRLEKWGYLVLLNKLD 755
           S   ++NN  Y+ +  R +    A+L   W R  +     + KNY+ E W  ++ L + D
Sbjct: 535 SNIFLMNNGRYMLQKIRGSPETNAMLGEAWARKQSTNLRQYHKNYQRETWSRVLGLLRDD 594

Query: 756 RI 761
            +
Sbjct: 595 GV 596


>04_01_0619 - 8125611-8127967,8128449-8130123
          Length = 1343

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = +3

Query: 591 QTLILNNNNYVHRAR---RSAAILN*KWRRTPTKKAHLFRKNYRLEKW 725
           QTLILNNNN+   +R    S +     WR  P++     R+ +  + W
Sbjct: 548 QTLILNNNNFSAASRAAVTSQSYAAASWRSHPSRSKAARRRRWPGQAW 595


>06_01_0027 -
           271199-271424,271628-272095,272721-273018,273133-273343,
           273427-274124,274921-274969,276059-276112,276244-276275,
           276319-276484,276563-276628,276717-276812,276868-276957,
           277302-277398,277496-277575,277709-277753,278006-278134,
           278593-278722,278888-279222,279918-280053,280149-280328,
           280422-280679,280752-281137
          Length = 1409

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 663 WRRTPTKKAHLFRKNYRLEKWGYLVLLNKLD 755
           W++     A +FR+ Y  E+   L+L+ KLD
Sbjct: 263 WKKAAESNAIIFRRGYATERQKGLLLVEKLD 293


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,114,222
Number of Sequences: 37544
Number of extensions: 278776
Number of successful extensions: 503
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)