Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0118
         (762 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56761| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_28528| Best HMM Match : TUDOR (HMM E-Value=0.34)                    28   7.2  
SB_33154| Best HMM Match : Glyco_hydro_92 (HMM E-Value=1.96182e-44)    28   9.5  
SB_21574| Best HMM Match : T-box (HMM E-Value=0)                       28   9.5  

>SB_56761| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 633

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 21/93 (22%), Positives = 38/93 (40%)
 Frame = +1

Query: 262 TYVNANFNTSPLHTFNTEITIKSVHEHDYYNRQNNLRLYTLAIYRYEINSYKI*LVITMI 441
           T  N  +NT  +  +NT+ T  +   ++ YN + N    T   Y  E NS  I       
Sbjct: 534 TEYNTEYNTEYITEYNTDYTEYNTEYNNEYNTEYNTEYNT--EYNTEYNSEYI-TEYNTE 590

Query: 442 YTVEYKLQFINIPINKHSKLFNRKNEIYFNNSF 540
           Y  EY  ++      +++  +N +    +N  +
Sbjct: 591 YNTEYNTEYNTEYNTEYNTEYNTEYNTEYNTDY 623



 Score = 27.9 bits (59), Expect = 9.5
 Identities = 23/99 (23%), Positives = 38/99 (38%)
 Frame = +1

Query: 262 TYVNANFNTSPLHTFNTEITIKSVHEHDYYNRQNNLRLYTLAIYRYEINSYKI*LVITMI 441
           T  N  +NT     +NTE   +   E+  YN + N    T   Y  E N+          
Sbjct: 301 TDYNTEYNTEYNTEYNTEYNTEYNTEYTEYNTEYNTEYNT--DYNTEYNT-----EYNTE 353

Query: 442 YTVEYKLQFINIPINKHSKLFNRKNEIYFNNSFKLLTNT 558
           Y  EY  ++I     +++  +N +    +N  +    NT
Sbjct: 354 YNTEYNTEYITEYNTEYNTEYNTEYNTEYNTEYNTEYNT 392


>SB_28528| Best HMM Match : TUDOR (HMM E-Value=0.34)
          Length = 736

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +1

Query: 445 TVEYKLQFINIPINKHSK--LFNRKNEIYFNNSFKL 546
           TV  +  FI IP+N HS+  L     ++  +NSFKL
Sbjct: 115 TVSIQAPFIIIPVNSHSRDALVADLGQLVVSNSFKL 150


>SB_33154| Best HMM Match : Glyco_hydro_92 (HMM E-Value=1.96182e-44)
          Length = 292

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +3

Query: 375 IYISYI*IRNKFIQDMTRNHNDLYSRVQATIY 470
           +Y+S I +  K + ++T NHND+ +  +   Y
Sbjct: 250 VYLSKIKLNGKILSNLTLNHNDIENGSELIFY 281


>SB_21574| Best HMM Match : T-box (HMM E-Value=0)
          Length = 473

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +3

Query: 60  KDN*KQKIFNSRSLIDRFGLRSLPLNTIWYNSNTK 164
           K+N  Q I N R LID+    SLP++    N NT+
Sbjct: 313 KNNTSQAIANIRPLIDQSACYSLPISGRSTNQNTR 347


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,847,602
Number of Sequences: 59808
Number of extensions: 354789
Number of successful extensions: 687
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)