Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0118
         (762 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77663-8|CAB01205.2|  337|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U23172-6|AAV58869.1|  484|Caenorhabditis elegans Hypothetical pr...    28   8.3  
U23172-5|AAC46527.1|  510|Caenorhabditis elegans Hypothetical pr...    28   8.3  
U23172-4|AAL02494.1|  521|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>Z77663-8|CAB01205.2|  337|Caenorhabditis elegans Hypothetical
           protein F53F4.9 protein.
          Length = 337

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +3

Query: 345 LLQQTE*FTPIYISYI*IRNKFIQDMTRNHNDLYSRVQ 458
           +L  T   TP+YI+   +R K I+++T N  D+ S+ +
Sbjct: 190 ILHMTCPITPVYITIWILRKKIIENLTSNSKDMSSKTK 227


>U23172-6|AAV58869.1|  484|Caenorhabditis elegans Hypothetical
           protein F25B5.6c protein.
          Length = 484

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 735 PGIPIFLGGSFFEISVLFLWAYDAIFNSRWP 643
           PG+P+    S F +    LW  DAI + RWP
Sbjct: 287 PGVPLSTDTSGFNVP---LWMCDAIESCRWP 314


>U23172-5|AAC46527.1|  510|Caenorhabditis elegans Hypothetical
           protein F25B5.6a protein.
          Length = 510

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 735 PGIPIFLGGSFFEISVLFLWAYDAIFNSRWP 643
           PG+P+    S F +    LW  DAI + RWP
Sbjct: 313 PGVPLSTDTSGFNVP---LWMCDAIESCRWP 340


>U23172-4|AAL02494.1|  521|Caenorhabditis elegans Hypothetical
           protein F25B5.6b protein.
          Length = 521

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 735 PGIPIFLGGSFFEISVLFLWAYDAIFNSRWP 643
           PG+P+    S F +    LW  DAI + RWP
Sbjct: 324 PGVPLSTDTSGFNVP---LWMCDAIESCRWP 351


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,454,308
Number of Sequences: 27780
Number of extensions: 298391
Number of successful extensions: 650
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)