Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0118
         (762 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13990.1 68418.m01636 exocyst subunit EXO70 family protein co...    29   4.5  
At5g35810.1 68418.m04303 hypothetical protein                          28   7.8  

>At5g13990.1 68418.m01636 exocyst subunit EXO70 family protein
           contains Pfam domain PF03081: Exo70 exocyst complex
           subunit;
          Length = 695

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = +3

Query: 600 ILNNNNYVHRARRSAA----ILN*KWRRTPTKKAHLFRKNYRLEKWGYLV 737
           ++NN  Y+ +  + +A    ++   W R  + +   + KNY+ E WG L+
Sbjct: 531 MMNNGRYIVQKIKGSAEIHEVMGDTWCRRRSSELRNYHKNYQRETWGKLL 580


>At5g35810.1 68418.m04303 hypothetical protein
          Length = 347

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = +1

Query: 436 MIYTVEYKLQ--FINIPINKHSKLFNRKNEI 522
           +I+TV++K Q  F    IN+H K+FNR  E+
Sbjct: 57  LIWTVDHKNQSLFHIAAINRHEKIFNRIYEL 87


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,925,331
Number of Sequences: 28952
Number of extensions: 252467
Number of successful extensions: 472
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)