Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0117
         (690 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          27   0.19 
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    24   1.3  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    23   1.8  
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    23   3.1  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   4.1  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   7.2  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 26.6 bits (56), Expect = 0.19
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = -1

Query: 408 STPYGSVDRSSPPSLPSNKCGSRNKS--TTSLAPPLYTGSASKRTARR 271
           S  Y S++ ++PP  P  +  S  ++  T S  PPLY    +KR   R
Sbjct: 720 SISYLSMENNAPPPPPPPRVESFAETVRTVSKIPPLYKDLVAKRCEER 767


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 656 RFRCQKAFFQTLVFGYGSLRASTRPHI 576
           RFR  K +F   ++G  +L+A  R H+
Sbjct: 354 RFRALKLWFVLRLYGIENLQAFIRKHV 380


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -1

Query: 369 SLPSNKCGSRNKSTTSLAPPLYTGSASKRTARRC 268
           SL S    + NKS+TS  PP +  S SK     C
Sbjct: 56  SLLSPSGNTPNKSSTSPYPPNHPLSGSKHLCSIC 89


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 386 STDPYGVLPLWRSNDLN 436
           + DPYG++  W ++ LN
Sbjct: 141 AVDPYGLVAQWATDALN 157


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -1

Query: 366 LPSNKCGSRNKSTTSLAPPLYTGSA--SKRTA 277
           LP+++C SR  S + + P   +G +  S+R A
Sbjct: 79  LPNSRCNSRESSDSLVQPRCPSGESMLSERAA 110


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 223 GDYKPELSSRPGLL 264
           GD+ PE++S P L+
Sbjct: 704 GDHVPEINSNPNLV 717


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,851
Number of Sequences: 336
Number of extensions: 4044
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18114270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)