Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0117
(690 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 148 7e-37
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 67 3e-12
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 63 3e-11
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 62 6e-11
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 47 3e-06
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 39 8e-04
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 38 0.001
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 38 0.002
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 33 0.029
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.5
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce... 27 1.9
SPBC11B10.02c |his3||histidinol-phosphate aminotransferase imida... 27 1.9
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 5.9
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 5.9
SPBC2G5.07c |rpc25||DNA-directed RNA polymerase III complex subu... 25 7.8
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 148 bits (359), Expect = 7e-37
Identities = 67/73 (91%), Positives = 71/73 (97%)
Frame = -3
Query: 508 TTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 329
TTMYPGIADRMQKEI ALAPS+MK+KI+APPERKYSVWIGGSILASLSTFQQMWISKQEY
Sbjct: 303 TTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEY 362
Query: 328 DESGPSIVHRKCF 290
DESGP IV+RKCF
Sbjct: 363 DESGPGIVYRKCF 375
Score = 63.7 bits (148), Expect = 2e-11
Identities = 31/54 (57%), Positives = 35/54 (64%)
Frame = -1
Query: 669 IGKRKIPLPKGFLPNPRFWVWKLAGIHETTYNSIMKCDVDIRKDLYANTVLSGG 508
IG + P+ P + AGIHE TYNSIMKCDVDIRKDLY N V+SGG
Sbjct: 250 IGNERFRAPEALF-QPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMSGG 302
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 66.9 bits (156), Expect = 3e-12
Identities = 33/78 (42%), Positives = 53/78 (67%), Gaps = 6/78 (7%)
Frame = -3
Query: 508 TTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASLSTFQQMWISK 338
T++ G + R+Q E++ L P + ++KI A ER Y+ W+GGSIL+SL TF Q+WIS+
Sbjct: 356 TSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSLGTFHQLWISR 414
Query: 337 QEYDESGP---SIVHRKC 293
QEY+E G +++ ++C
Sbjct: 415 QEYEEHGSDRLALIEKRC 432
Score = 33.5 bits (73), Expect = 0.029
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -1
Query: 606 KLAGIHETTYNSIMKCDVDIRKDLYANTVLSGG 508
++ GI + N I +CDVDIR L N ++ GG
Sbjct: 323 RILGIPQLFQNCISECDVDIRASLLNNVIVCGG 355
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 63.3 bits (147), Expect = 3e-11
Identities = 28/73 (38%), Positives = 50/73 (68%)
Frame = -3
Query: 508 TTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 329
+T+ G +R E+ A++ ++KI A PER ++ W+GGSILASLSTF+++ I+ +EY
Sbjct: 308 STLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSEEY 367
Query: 328 DESGPSIVHRKCF 290
++ +++ R+ F
Sbjct: 368 -KNDQNVIFRRRF 379
Score = 40.3 bits (90), Expect = 3e-04
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = -1
Query: 627 NPRFWVWKLAGIHETTYNSIMKCDVDIRKDLYANTVLSGG 508
NP + +G+H + SI+ D+D+R LY+N VLSGG
Sbjct: 268 NPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVLSGG 307
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 62.5 bits (145), Expect = 6e-11
Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Frame = -3
Query: 508 TTMYPGIADRMQKEITALAP-STMKIKIIAPPER-KYSVWIGGSILASLSTFQQMWISKQ 335
T++ PG+++R+Q E+ LA S + + +VW GGSILASL FQ +W+SKQ
Sbjct: 353 TSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLDNFQHLWVSKQ 412
Query: 334 EYDESG 317
EYDE G
Sbjct: 413 EYDEVG 418
Score = 36.7 bits (81), Expect = 0.003
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = -1
Query: 597 GIHETTYNSIMKCDVDIRKDLYANTVLSGG 508
G+HE Y SI+ CD ++R L N V++GG
Sbjct: 323 GLHELVYQSILACDSELRSPLLNNIVVTGG 352
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 46.8 bits (106), Expect = 3e-06
Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 12/76 (15%)
Frame = -3
Query: 508 TTMYPGIADRMQKEITAL--------APSTM---KIKIIAPPERKYSVWIGGSILAS-LS 365
++MY G+ R++KEI L P+ + K+KI P R+++V+IGG++LA ++
Sbjct: 303 SSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVLADIMA 362
Query: 364 TFQQMWISKQEYDESG 317
MW+SK E++E G
Sbjct: 363 QNDHMWVSKAEWEEYG 378
Score = 34.3 bits (75), Expect = 0.017
Identities = 16/30 (53%), Positives = 20/30 (66%)
Frame = -1
Query: 597 GIHETTYNSIMKCDVDIRKDLYANTVLSGG 508
G+ E +++I DVDIRK LY VLSGG
Sbjct: 273 GLSEFIFDTIQAADVDIRKYLYRAIVLSGG 302
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 38.7 bits (86), Expect = 8e-04
Identities = 20/68 (29%), Positives = 35/68 (51%)
Frame = -3
Query: 499 YPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDES 320
+PG R+ E+ +LAP+ ++K+ P + W S + L + I++ EY E
Sbjct: 332 FPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRSEYSEH 390
Query: 319 GPSIVHRK 296
G +I+ RK
Sbjct: 391 GANIMTRK 398
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 37.9 bits (84), Expect = 0.001
Identities = 16/64 (25%), Positives = 31/64 (48%)
Frame = -3
Query: 496 PGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 317
PG+ R+++E+T++ P I + W G S + F+ ++++EY E G
Sbjct: 648 PGMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKG 707
Query: 316 PSIV 305
P +
Sbjct: 708 PEYI 711
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 37.5 bits (83), Expect = 0.002
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = -3
Query: 436 IKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 299
+ +I+ ++ +VW GGS+LA F +K +Y+E G SI R
Sbjct: 374 VNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
Score = 31.5 bits (68), Expect = 0.12
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -1
Query: 603 LAGIHETTYNSIMKCDVDIRKDLYANTVLSGG 508
L + E N + +D+RK LY N VLSGG
Sbjct: 304 LTPLPELVDNVVQSSPIDVRKGLYKNIVLSGG 335
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 33.5 bits (73), Expect = 0.029
Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Frame = -3
Query: 520 IVRWTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASLSTFQQM 350
IV +PG A +++ I + + I +I PP + ++ W G I + ++
Sbjct: 535 IVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYNRIRIVSEL 594
Query: 349 WISKQEYDESGPSIVHRK 296
WI ++ G ++ K
Sbjct: 595 WIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -3
Query: 397 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 296
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 481
Score = 27.5 bits (58), Expect = 1.9
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = -1
Query: 381 SSPPSLPSNKCGSRNKSTTSLAPPLYTGSASKRTARRCLQQPGPAA 244
S PPSL S + G + STTS++P T + +Q+P P A
Sbjct: 332 SLPPSLASPEKGGIS-STTSVSPAAQASPVLSTTTQPKVQKPVPKA 376
>SPBC11B10.02c |his3||histidinol-phosphate aminotransferase
imidazole acetol phosphate transaminase
His3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 27.5 bits (58), Expect = 1.9
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +2
Query: 452 GESCDFLLHTVGDSRVHGGPPDNTVLAYKSLRMSTSH 562
G +F+L V D R GG P N Y L+M+T H
Sbjct: 304 GYDANFILIQVLD-RPEGGKPSNDAAKYLYLQMATMH 339
>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 412
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = -1
Query: 339 NKSTTSLAPPLYTGSASKRTARRCLQQPGPAAQFRLVISVNLIVRKI 199
N+S +SL+ Y+ SK+T+ L + + Q +++ I+R++
Sbjct: 241 NRSGSSLSSNFYSSRLSKKTSLASLNKSRASLQHKIMSLSRNIIRRV 287
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 472 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 362
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPBC2G5.07c |rpc25||DNA-directed RNA polymerase III complex subunit
Rpc25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 203
Score = 25.4 bits (53), Expect = 7.8
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1
Query: 645 PKGFLPNPRFWVWKLAG 595
P F P+ R WVWK+ G
Sbjct: 117 PCVFRPDERAWVWKIEG 133
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,972,125
Number of Sequences: 5004
Number of extensions: 64393
Number of successful extensions: 206
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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