BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0117 (690 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 155 4e-38 SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 154 6e-38 SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 154 6e-38 SB_56| Best HMM Match : Actin (HMM E-Value=0) 154 6e-38 SB_56628| Best HMM Match : Actin (HMM E-Value=0) 154 7e-38 SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 152 2e-37 SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 133 1e-31 SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 49 3e-06 SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 45 5e-05 SB_54| Best HMM Match : Actin (HMM E-Value=0) 44 2e-04 SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04 SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 32 0.50 SB_41148| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2 SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5 SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5 SB_50737| Best HMM Match : PKD (HMM E-Value=0.033) 29 2.7 SB_5589| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6 SB_50207| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7 SB_9926| Best HMM Match : DPPIV_N (HMM E-Value=0) 29 4.7 SB_47504| Best HMM Match : RVT_1 (HMM E-Value=1.4e-07) 29 4.7 SB_36169| Best HMM Match : DUF676 (HMM E-Value=0) 28 8.2 SB_41368| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2 >SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 349 Score = 155 bits (375), Expect = 4e-38 Identities = 81/117 (69%), Positives = 92/117 (78%), Gaps = 4/117 (3%) Frame = -3 Query: 628 KPSFLGMEACG-HPRDHI*LHH---EVRRGHP*GLVRQHRIVRWTTMYPGIADRMQKEIT 461 +PSFLGME+ G H + + ++R+ L + TTMYPG+ADRMQKEI+ Sbjct: 237 QPSFLGMESSGIHETTYNSIMKCDVDIRKD----LYANTVMSGGTTMYPGLADRMQKEIS 292 Query: 460 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 290 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP+IVHRKCF Sbjct: 293 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPAIVHRKCF 349 Score = 73.7 bits (173), Expect = 1e-13 Identities = 35/54 (64%), Positives = 40/54 (74%) Frame = -1 Query: 669 IGKRKIPLPKGFLPNPRFWVWKLAGIHETTYNSIMKCDVDIRKDLYANTVLSGG 508 IG + P+ L P F + +GIHETTYNSIMKCDVDIRKDLYANTV+SGG Sbjct: 224 IGNERFRCPEALL-QPSFLGMESSGIHETTYNSIMKCDVDIRKDLYANTVMSGG 276 >SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 338 Score = 154 bits (374), Expect = 6e-38 Identities = 81/117 (69%), Positives = 91/117 (77%), Gaps = 4/117 (3%) Frame = -3 Query: 628 KPSFLGMEACG-HPRDHI*LHH---EVRRGHP*GLVRQHRIVRWTTMYPGIADRMQKEIT 461 +PSFLGME+ G H + + ++R+ L + TTMYPGIADRMQKEI+ Sbjct: 226 QPSFLGMESAGIHETTYNSIMKCDVDIRKD----LYANTVLSGGTTMYPGIADRMQKEIS 281 Query: 460 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 290 ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP+IVHRKCF Sbjct: 282 ALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPAIVHRKCF 338 Score = 74.1 bits (174), Expect = 1e-13 Identities = 36/54 (66%), Positives = 39/54 (72%) Frame = -1 Query: 669 IGKRKIPLPKGFLPNPRFWVWKLAGIHETTYNSIMKCDVDIRKDLYANTVLSGG 508 IG + P+ P F + AGIHETTYNSIMKCDVDIRKDLYANTVLSGG Sbjct: 213 IGNERFRCPEAMF-QPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGG 265 >SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 376 Score = 154 bits (374), Expect = 6e-38 Identities = 81/117 (69%), Positives = 91/117 (77%), Gaps = 4/117 (3%) Frame = -3 Query: 628 KPSFLGMEACG-HPRDHI*LHH---EVRRGHP*GLVRQHRIVRWTTMYPGIADRMQKEIT 461 +PSFLGME+ G H + + ++R+ L + +TMYPGIADRMQKEIT Sbjct: 264 QPSFLGMESAGIHETTYNSIMKCDVDIRKD----LYANTVLSGGSTMYPGIADRMQKEIT 319 Query: 460 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 290 +LAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF Sbjct: 320 SLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376 Score = 74.1 bits (174), Expect = 1e-13 Identities = 36/54 (66%), Positives = 39/54 (72%) Frame = -1 Query: 669 IGKRKIPLPKGFLPNPRFWVWKLAGIHETTYNSIMKCDVDIRKDLYANTVLSGG 508 IG + P+ P F + AGIHETTYNSIMKCDVDIRKDLYANTVLSGG Sbjct: 251 IGNERFRCPEAMF-QPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGG 303 >SB_56| Best HMM Match : Actin (HMM E-Value=0) Length = 375 Score = 154 bits (374), Expect = 6e-38 Identities = 81/117 (69%), Positives = 91/117 (77%), Gaps = 4/117 (3%) Frame = -3 Query: 628 KPSFLGMEACG-HPRDHI*LHH---EVRRGHP*GLVRQHRIVRWTTMYPGIADRMQKEIT 461 +PSFLGME+ G H + + ++R+ L + +TMYPGIADRMQKEIT Sbjct: 263 QPSFLGMESAGIHETTYNSIMKCDVDIRKD----LYANTVLSGGSTMYPGIADRMQKEIT 318 Query: 460 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 290 +LAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF Sbjct: 319 SLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375 Score = 74.1 bits (174), Expect = 1e-13 Identities = 36/54 (66%), Positives = 39/54 (72%) Frame = -1 Query: 669 IGKRKIPLPKGFLPNPRFWVWKLAGIHETTYNSIMKCDVDIRKDLYANTVLSGG 508 IG + P+ P F + AGIHETTYNSIMKCDVDIRKDLYANTVLSGG Sbjct: 250 IGNERFRCPEAMF-QPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGG 302 >SB_56628| Best HMM Match : Actin (HMM E-Value=0) Length = 376 Score = 154 bits (373), Expect = 7e-38 Identities = 81/117 (69%), Positives = 91/117 (77%), Gaps = 4/117 (3%) Frame = -3 Query: 628 KPSFLGMEACG-HPRDHI*LHH---EVRRGHP*GLVRQHRIVRWTTMYPGIADRMQKEIT 461 +PSFLGME+ G H + + ++R+ L + +TMYPGIADRMQKEI+ Sbjct: 264 QPSFLGMESAGIHETTYNSIMKCDVDIRKD----LYANTVLSGGSTMYPGIADRMQKEIS 319 Query: 460 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 290 ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF Sbjct: 320 ALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376 Score = 74.1 bits (174), Expect = 1e-13 Identities = 36/54 (66%), Positives = 39/54 (72%) Frame = -1 Query: 669 IGKRKIPLPKGFLPNPRFWVWKLAGIHETTYNSIMKCDVDIRKDLYANTVLSGG 508 IG + P+ P F + AGIHETTYNSIMKCDVDIRKDLYANTVLSGG Sbjct: 251 IGNERFRCPEAMF-QPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGG 303 >SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 375 Score = 152 bits (369), Expect = 2e-37 Identities = 80/117 (68%), Positives = 91/117 (77%), Gaps = 4/117 (3%) Frame = -3 Query: 628 KPSFLGMEACG-HPRDHI*LHH---EVRRGHP*GLVRQHRIVRWTTMYPGIADRMQKEIT 461 +PSFLGME+ G H + + ++R+ L + +TM+PGIADRMQKEI+ Sbjct: 263 QPSFLGMESAGIHETTYNSIMKCDVDIRKD----LYANTVLSGGSTMFPGIADRMQKEIS 318 Query: 460 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 290 ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF Sbjct: 319 ALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375 Score = 74.1 bits (174), Expect = 1e-13 Identities = 36/54 (66%), Positives = 39/54 (72%) Frame = -1 Query: 669 IGKRKIPLPKGFLPNPRFWVWKLAGIHETTYNSIMKCDVDIRKDLYANTVLSGG 508 IG + P+ P F + AGIHETTYNSIMKCDVDIRKDLYANTVLSGG Sbjct: 250 IGNERFRCPEAMF-QPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGG 302 >SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) Length = 149 Score = 133 bits (321), Expect = 1e-31 Identities = 59/73 (80%), Positives = 67/73 (91%) Frame = -3 Query: 508 TTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEY 329 +TM+PGIADRMQKEI LA ++MK+K+IAPPERKYSVWIGGSILASLSTFQQMWI+K+EY Sbjct: 77 STMFPGIADRMQKEIAMLANASMKVKVIAPPERKYSVWIGGSILASLSTFQQMWIAKEEY 136 Query: 328 DESGPSIVHRKCF 290 E GP IVHRKCF Sbjct: 137 HEYGPPIVHRKCF 149 Score = 62.5 bits (145), Expect = 3e-10 Identities = 30/54 (55%), Positives = 34/54 (62%) Frame = -1 Query: 669 IGKRKIPLPKGFLPNPRFWVWKLAGIHETTYNSIMKCDVDIRKDLYANTVLSGG 508 IG + P+ P F + GIHE YN IMKCDVDIRKDLY+N VLSGG Sbjct: 24 IGNERFRCPEAMF-QPAFLGMEAPGIHEAIYNCIMKCDVDIRKDLYSNCVLSGG 76 >SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) Length = 543 Score = 49.2 bits (112), Expect = 3e-06 Identities = 23/60 (38%), Positives = 36/60 (60%) Frame = -3 Query: 457 LAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF*THR 278 + P ++ ++I+ ++Y+VW GGS+LAS F + +K +YDE GPSI F HR Sbjct: 285 IKPKPIETQVISHHMQRYAVWFGGSMLASTPEFYSVCHTKADYDEHGPSICRHNPF-LHR 343 Score = 34.7 bits (76), Expect = 0.071 Identities = 14/29 (48%), Positives = 18/29 (62%) Frame = -1 Query: 594 IHETTYNSIMKCDVDIRKDLYANTVLSGG 508 + E N I C +D+R+ LY N VLSGG Sbjct: 223 LSEVVDNVIQNCPIDVRRPLYKNIVLSGG 251 >SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) Length = 240 Score = 45.2 bits (102), Expect = 5e-05 Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 3/61 (4%) Frame = -3 Query: 541 GLVRQHRIVRWTTMYPGIADRMQKEITALAPSTMKIKIIA---PPERKYSVWIGGSILAS 371 GL + T+ G +R+ +E+ + P +M++K+I+ E++++ WIGGSILAS Sbjct: 170 GLFNSVIVTGGNTLLQGFVERLNRELVSKTPPSMRLKLISNNSSVEKRFNPWIGGSILAS 229 Query: 370 L 368 L Sbjct: 230 L 230 >SB_54| Best HMM Match : Actin (HMM E-Value=0) Length = 2486 Score = 43.6 bits (98), Expect = 2e-04 Identities = 17/29 (58%), Positives = 23/29 (79%) Frame = -1 Query: 597 GIHETTYNSIMKCDVDIRKDLYANTVLSG 511 GIHE+ + SI KCD+D+R +L+ N VLSG Sbjct: 2318 GIHESIFKSIKKCDIDLRAELFHNIVLSG 2346 >SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 411 Score = 41.5 bits (93), Expect = 6e-04 Identities = 17/42 (40%), Positives = 29/42 (69%), Gaps = 1/42 (2%) Frame = -3 Query: 439 KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESG 317 KI+I PP RK+ V++GG++LA + W++++EY+E G Sbjct: 358 KIRIEDPPRRKHMVFMGGAVLADIMKDKDSFWMTRKEYEEKG 399 Score = 33.9 bits (74), Expect = 0.12 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = -1 Query: 597 GIHETTYNSIMKCDVDIRKDLYANTVLSGG 508 G+ E +N+I D+D R + Y + VLSGG Sbjct: 277 GVAELLFNTIQAADIDTRSEFYKHIVLSGG 306 >SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) Length = 367 Score = 31.9 bits (69), Expect = 0.50 Identities = 13/22 (59%), Positives = 18/22 (81%) Frame = -1 Query: 573 SIMKCDVDIRKDLYANTVLSGG 508 +I K D+D+R+ LY+N VLSGG Sbjct: 264 AIQKSDLDLRRVLYSNIVLSGG 285 >SB_41148| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 583 Score = 30.7 bits (66), Expect = 1.2 Identities = 12/35 (34%), Positives = 20/35 (57%) Frame = -1 Query: 336 KSTTSLAPPLYTGSASKRTARRCLQQPGPAAQFRL 232 K+T P++T S K+T R C++ P P + R+ Sbjct: 18 KNTLRFIMPVFTRSGRKKTNRTCIEDPTPQTERRV 52 >SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 245 Score = 30.3 bits (65), Expect = 1.5 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 9/75 (12%) Frame = -3 Query: 520 IVRWTTMYPGIADRMQKEITALAPSTM--------KIKIIAPP-ERKYSVWIGGSILASL 368 ++ T M PG R+ +EI L S +K+ PP + W+GG+I SL Sbjct: 83 LIGGTAMTPGFKHRLMQEIYLLLQSPKYKDKLFIKTVKMHQPPVNANITAWLGGAIFGSL 142 Query: 367 STFQQMWISKQEYDE 323 +++ Y + Sbjct: 143 EVLADRSTTRERYQQ 157 >SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1068 Score = 30.3 bits (65), Expect = 1.5 Identities = 17/48 (35%), Positives = 25/48 (52%) Frame = -1 Query: 663 KRKIPLPKGFLPNPRFWVWKLAGIHETTYNSIMKCDVDIRKDLYANTV 520 KR+I L KG PN V + + + TY + +K + + K Y NTV Sbjct: 647 KRQISLSKGTYPNT---VKRQISLSKGTYQNTVKRQISLSKGTYPNTV 691 Score = 28.7 bits (61), Expect = 4.7 Identities = 17/48 (35%), Positives = 25/48 (52%) Frame = -1 Query: 663 KRKIPLPKGFLPNPRFWVWKLAGIHETTYNSIMKCDVDIRKDLYANTV 520 KR+I L KG PN V + + E TY + +K + + + Y NTV Sbjct: 587 KRQINLSKGTYPNT---VKRQISLLEGTYQNTVKRQISLLEGTYPNTV 631 >SB_50737| Best HMM Match : PKD (HMM E-Value=0.033) Length = 248 Score = 29.5 bits (63), Expect = 2.7 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 1/63 (1%) Frame = -1 Query: 654 IPLPKGFLPNPRFWVWKLAGIHETTYNSIMKCDVDIRKDLYANTVL-SGGPPCTLESPTV 478 I LPK PNP++ V+ L ++ D I +LY N L GGP T P + Sbjct: 42 ITLPKYSFPNPKYKVYGL-----PNKEMVLSVDPAIGCNLYYNWSLGDGGPDITTTGPNI 96 Query: 477 CKR 469 R Sbjct: 97 TYR 99 >SB_5589| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 583 Score = 29.1 bits (62), Expect = 3.6 Identities = 15/40 (37%), Positives = 20/40 (50%) Frame = -1 Query: 408 STPYGSVDRSSPPSLPSNKCGSRNKSTTSLAPPLYTGSAS 289 STP +V PP PSN+ + +K S +P T S S Sbjct: 217 STPQATVQTPPPPPEPSNEPSTSSKPKASPSPSSITTSTS 256 >SB_50207| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 318 Score = 28.7 bits (61), Expect = 4.7 Identities = 12/37 (32%), Positives = 15/37 (40%) Frame = -1 Query: 366 LPSNKCGSRNKSTTSLAPPLYTGSASKRTARRCLQQP 256 L C SR K P Y G RT ++C +P Sbjct: 118 LVKRTCNSRKKKKPEKRPSSYNGDTDYRTRKQCRYEP 154 >SB_9926| Best HMM Match : DPPIV_N (HMM E-Value=0) Length = 1066 Score = 28.7 bits (61), Expect = 4.7 Identities = 12/41 (29%), Positives = 23/41 (56%) Frame = -1 Query: 363 PSNKCGSRNKSTTSLAPPLYTGSASKRTARRCLQQPGPAAQ 241 P N+ G++ + +L P++TGS + R +P P+A+ Sbjct: 879 PGNQAGNKTRPLRALRSPIHTGSTLEVDRTRQGTRPDPSAR 919 >SB_47504| Best HMM Match : RVT_1 (HMM E-Value=1.4e-07) Length = 1002 Score = 28.7 bits (61), Expect = 4.7 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%) Frame = -3 Query: 526 HRIVRWTTMYPGIADRMQKEI--TALAPSTMKIKIIAPPERKYSVWI 392 HRIVRW T+ +A + + T L P +I+II P Y V I Sbjct: 826 HRIVRWVTLALFVALVVLATVFATKLKPDEEQIEIIGPGTNWYDVRI 872 >SB_36169| Best HMM Match : DUF676 (HMM E-Value=0) Length = 2442 Score = 27.9 bits (59), Expect = 8.2 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%) Frame = -1 Query: 390 VDRSSPPSLPSNKCGSRNKSTTSLAPPLYTGSA-SKRTA 277 VD+S P SLP+ K G + S P GS+ SK TA Sbjct: 1939 VDKSEPGSLPTVKFGVTTTADASSMPKFQFGSSGSKDTA 1977 >SB_41368| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 385 Score = 27.9 bits (59), Expect = 8.2 Identities = 17/58 (29%), Positives = 28/58 (48%) Frame = -2 Query: 428 HCSSREEVLRMDRWIDPRLPLYLPTNVDLETRVRRVWPLHCTQEVLLNAPRVAASSSP 255 HC+ +E L+ W + LP+ + V+R + L Q+VL P +S+SP Sbjct: 228 HCNFWDEKLKEGDWEPEEIASKLPSFLSFVRDVQRNFSLGDEQDVLERPPPRWSSNSP 285 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 23,397,436 Number of Sequences: 59808 Number of extensions: 547685 Number of successful extensions: 1615 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 1485 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1599 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1793485733 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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