Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0117
         (690 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             124   6e-31
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    25   0.90 
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   4.8  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   4.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.4  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   8.4  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  124 bits (300), Expect = 6e-31
 Identities = 68/100 (68%), Positives = 76/100 (76%), Gaps = 4/100 (4%)
 Frame = -3

Query: 628 KPSFLGMEACG-HPRDHI*LHH---EVRRGHP*GLVRQHRIVRWTTMYPGIADRMQKEIT 461
           +PSFLGMEACG H   +  +     ++R+     L     +   TTMYPGIADRMQKEIT
Sbjct: 38  QPSFLGMEACGIHETTYNSIMKCDVDIRKD----LYANTVLSGGTTMYPGIADRMQKEIT 93

Query: 460 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWIS 341
           ALAPSTMKIKIIAPPE+KYSVWIGGSILASLSTFQQMWIS
Sbjct: 94  ALAPSTMKIKIIAPPEKKYSVWIGGSILASLSTFQQMWIS 133



 Score = 72.9 bits (171), Expect = 3e-15
 Identities = 35/54 (64%), Positives = 38/54 (70%)
 Frame = -1

Query: 669 IGKRKIPLPKGFLPNPRFWVWKLAGIHETTYNSIMKCDVDIRKDLYANTVLSGG 508
           IG  +   P+     P F   +  GIHETTYNSIMKCDVDIRKDLYANTVLSGG
Sbjct: 25  IGNERFRCPEALF-QPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGG 77


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = -2

Query: 677 HPPSENERFRCQKAFFQTLVFGYGSLRASTRPHITPS*SATWTSV 543
           HP   ++ +R ++ F   + F Y    A      T + + TWT V
Sbjct: 199 HPGFADKEYRARRKFIAEIAFAYRYGDAIPTVPYTETETETWTRV 243


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -2

Query: 539 TCTPTPYCPVDHHVPWNRRP 480
           +C P PY  + + +   RRP
Sbjct: 194 SCCPEPYPDITYEIRLRRRP 213



 Score = 21.4 bits (43), Expect = 8.4
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -2

Query: 509 DHHVPWNRRPYA 474
           DHH+ WN   +A
Sbjct: 64  DHHLKWNASEFA 75


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 575 LYVVSWMPASFHTQKRGFGRK 637
           LYV+SW P    +    FG K
Sbjct: 282 LYVLSWTPYGVMSMIGAFGNK 302


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -3

Query: 511  WTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYS 401
            W T    I +    +I ALAPS      IA  + K++
Sbjct: 1251 WVTASTNIGEGEASKIVALAPSVRVPAKIASFDDKFT 1287


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = -3

Query: 520 IVRWTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILAS 371
           IV ++   PG  + M+++  AL  +     ++    RKY V     I A+
Sbjct: 389 IVEFSKRLPGFDELMREDQIALLKACSSEVMMLRMARKYDVQTDSIIFAN 438


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,104
Number of Sequences: 438
Number of extensions: 5236
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)