Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0116
         (742 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ888865-1|CAI61930.1|  108|Tribolium castaneum modulator of act...    23   2.0  
AJ622939-1|CAF22091.1|  108|Tribolium castaneum ETS activity mod...    23   2.0  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   3.4  

>AJ888865-1|CAI61930.1|  108|Tribolium castaneum modulator of
           activity of ets genes protein.
          Length = 108

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = +1

Query: 424 LPQSRNL-NTKFLCLLSIGGF 483
           +P SR L N K LCL+S+G F
Sbjct: 60  VPSSRFLMNGKALCLMSLGMF 80


>AJ622939-1|CAF22091.1|  108|Tribolium castaneum ETS activity
           modulator protein.
          Length = 108

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = +1

Query: 424 LPQSRNL-NTKFLCLLSIGGF 483
           +P SR L N K LCL+S+G F
Sbjct: 60  VPSSRFLMNGKALCLMSLGMF 80


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +2

Query: 632  VLRSYVKRDKKCI 670
            VLR Y K D KCI
Sbjct: 2188 VLRGYAKPDPKCI 2200


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,571
Number of Sequences: 336
Number of extensions: 3936
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19884055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)