Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0116
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch...    29   0.53 
SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch...    26   6.5  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    26   6.5  
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa...    26   6.5  

>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -3

Query: 605 FLISPTRNRRQNSPSLRQITAFLENRSVVLRFWPSPASRILNPPMDKRQ 459
           FL+S  +N  +N PS+     +    SV L +WPS +     PP+D+R+
Sbjct: 256 FLLS-YKNGSRNVPSILLAALY----SVALTYWPSDSRSFGAPPLDQRK 299


>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 309 MEY*SRLKSPITNQSPFCLT*YLAAYDLRSD 217
           +EY   +++ I+N+  F  T Y A YD  +D
Sbjct: 408 LEYADEIRNNISNERTFDFTHYKAEYDFPND 438


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 18/36 (50%), Positives = 20/36 (55%)
 Frame = -2

Query: 690 VKQFFL*IHFLSLFTYDLSTHVCFQNVRLSYIPDAE 583
           V QF L  H+LS    DL T VC Q  R+S I  AE
Sbjct: 610 VVQFIL-DHYLSSGEKDLQTVVCTQPRRISAISLAE 644


>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 394

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = +1

Query: 277 DWGFQTALIFHLT*TRTDSIM*CNESRNLDGVDCNRRLGDALIDGPRFRLPQ 432
           +W F T    + T T T +++ CN  R +D +    R  +  +      +PQ
Sbjct: 245 EWKFDTLCDLYDTLTITQAVIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQ 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,150,031
Number of Sequences: 5004
Number of extensions: 67391
Number of successful extensions: 149
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)