Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0116
         (742 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0181 + 20985960-20987825,20987904-20989169                       30   2.2  
04_04_0032 + 22291469-22291818,22292438-22292681,22292873-222930...    29   5.1  
01_01_0813 - 6327086-6327262,6327342-6327440,6327516-6327608,632...    29   5.1  
07_03_1183 - 24618144-24618235,24618287-24618399,24618421-24618500     28   9.0  
03_03_0248 + 15819264-15819460,15820691-15820729,15820797-158209...    28   9.0  

>11_06_0181 + 20985960-20987825,20987904-20989169
          Length = 1043

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 6/113 (5%)
 Frame = -3

Query: 632 RTCASRMCDFLISPTRNRRQNSPSLRQITAFLENRSVVLRFWPSPASRILNPPMDKR--- 462
           R CASR  +     T+   +   ++  +   +   + VL FW       + P   KR   
Sbjct: 130 RQCASR--EVAKEATQPPNKTDSNISNVAGSMTPSASVLVFWT------ICPHCQKRFLY 181

Query: 461 -QRNFVFKFRDCGNRNLGPSI--RASPKRLLQSTPSRFRLSLHYIMESVRVHV 312
            QRNF+ +  DCG R     +  ++ P R+L +   + +LS   ++   R  V
Sbjct: 182 YQRNFLARCSDCGKRFFAIKLHEQSVPSRILSTAAKKSQLSTSEMLSFQRSSV 234


>04_04_0032 +
           22291469-22291818,22292438-22292681,22292873-22293052,
           22293843-22294070
          Length = 333

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = -1

Query: 433 IAAIEI-WVRRLGRLLSACYSRRHRDFDSRCIT*WSQCEFMLNGILKPSEIPNH*PVSVL 257
           +A I + W+   G  +    ++R R  ++  I  W   +      LK S+IP H  VSVL
Sbjct: 256 VAQISLRWIYEQGASMVTTSTKRERLKENIDIFDWQLSD---EDRLKISQIPQHKTVSVL 312

Query: 256 SNIIPCGV 233
           S + P GV
Sbjct: 313 SILCPDGV 320


>01_01_0813 -
           6327086-6327262,6327342-6327440,6327516-6327608,
           6327695-6327898,6327988-6328109,6329606-6329738,
           6330232-6330270,6332308-6332412
          Length = 323

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 577 DKIHRPSDR*QRFSKTGASCYVFGPRQLR 491
           DK+HR  D   R S T A+C V+  R+ R
Sbjct: 47  DKLHREDDGLSRTSPTAAACAVWAQRRRR 75


>07_03_1183 - 24618144-24618235,24618287-24618399,24618421-24618500
          Length = 94

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = +1

Query: 397 ALIDGPRFRLPQSRNLNTKFLCLLSIGGFNIREAGEGQKRNTTLLFSR 540
           A I GP F L +   LN  F    S  G+  +  G+G+K NTT  F +
Sbjct: 2   AAIVGPPFLLMKQMQLNFTFH---SDAGWCKQFVGDGEKENTTFTFMK 46


>03_03_0248 +
           15819264-15819460,15820691-15820729,15820797-15820936,
           15821150-15821225,15822866-15823160,15823236-15823342,
           15823442-15823489,15823568-15823853,15823954-15823961,
           15824083-15824184,15824426-15824553,15824664-15824741,
           15825047-15825145,15825247-15825302
          Length = 552

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/49 (32%), Positives = 29/49 (59%)
 Frame = +3

Query: 96  KKTRSNSSVLQERRNLFKRRATVSDVPSRRHEKISHSRSSYQSANHTPQ 242
           +++ S  S  + RR+  + R+  S   SRRH + +H+ S+Y+S   TP+
Sbjct: 288 RRSPSYDSYSRGRRSRSRSRSR-SPSYSRRHGRGTHAESNYRSKPKTPR 335


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,676,903
Number of Sequences: 37544
Number of extensions: 415290
Number of successful extensions: 918
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)