Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0116
         (742 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9469| Best HMM Match : IRK (HMM E-Value=0)                          87   1e-17
SB_58706| Best HMM Match : IRK (HMM E-Value=0)                         71   1e-12
SB_13167| Best HMM Match : APH (HMM E-Value=1e-04)                     30   2.3  
SB_7412| Best HMM Match : IRK (HMM E-Value=2.2e-20)                    29   3.0  
SB_54030| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_41254| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_24269| Best HMM Match : PAH (HMM E-Value=3.2)                       28   9.1  
SB_792| Best HMM Match : PAH (HMM E-Value=3.2)                         28   9.1  

>SB_9469| Best HMM Match : IRK (HMM E-Value=0)
          Length = 520

 Score = 87.4 bits (207), Expect = 1e-17
 Identities = 34/60 (56%), Positives = 51/60 (85%)
 Frame = +1

Query: 64  VGIVFAKLSRPKKRAQTLLYSRNAVICLRDGQLCLMFRVGDMRKSHIVEAHIRAQIIRRK 243
           +G++FAKLSRP+ RA+T+L+S+ A++C+RDG++CL FRVGD+RKS I+  HIR Q+ R +
Sbjct: 220 MGLIFAKLSRPRNRAETILFSKKALVCVRDGKMCLTFRVGDIRKSQILHCHIRVQLFRTR 279



 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 32/70 (45%), Positives = 43/70 (61%)
 Frame = +1

Query: 454 FLCLLSIGGFNIREAGEGQKRNTTLLFSRNAVICLRDGEFCLLFRVGDIRKSHILEAHVR 633
           FL    I G    +    + R  T+LFS+ A++C+RDG+ CL FRVGDIRKS IL  H+R
Sbjct: 213 FLINALIMGLIFAKLSRPRNRAETILFSKKALVCVRDGKMCLTFRVGDIRKSQILHCHIR 272

Query: 634 AQIIRKKGQK 663
            Q+ R +  K
Sbjct: 273 VQLFRTRKTK 282


>SB_58706| Best HMM Match : IRK (HMM E-Value=0)
          Length = 385

 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 28/53 (52%), Positives = 44/53 (83%)
 Frame = +1

Query: 64  VGIVFAKLSRPKKRAQTLLYSRNAVICLRDGQLCLMFRVGDMRKSHIVEAHIR 222
           +G++FAKLSRP+ RA T+ +S+ AV+  +DG+LCL+FRVGD+RKS ++E  ++
Sbjct: 176 LGLIFAKLSRPRPRAHTIRFSKRAVVSKKDGKLCLIFRVGDIRKSQLLEVTVK 228



 Score = 51.6 bits (118), Expect = 6e-07
 Identities = 24/55 (43%), Positives = 35/55 (63%)
 Frame = +1

Query: 469 SIGGFNIREAGEGQKRNTTLLFSRNAVICLRDGEFCLLFRVGDIRKSHILEAHVR 633
           S+ G    +    + R  T+ FS+ AV+  +DG+ CL+FRVGDIRKS +LE  V+
Sbjct: 174 SLLGLIFAKLSRPRPRAHTIRFSKRAVVSKKDGKLCLIFRVGDIRKSQLLEVTVK 228


>SB_13167| Best HMM Match : APH (HMM E-Value=1e-04)
          Length = 374

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/41 (34%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
 Frame = -3

Query: 623 ASRMCDFLISPTRNRR--QNSPSLRQITAFLENRSVVLRFW 507
           A+RMC   +  ++N    +N+  L+++T   +NR+++LRFW
Sbjct: 307 AARMCMLFVISSQNMHINKNNKYLKEVTR--DNRALMLRFW 345


>SB_7412| Best HMM Match : IRK (HMM E-Value=2.2e-20)
          Length = 610

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/22 (54%), Positives = 19/22 (86%), Gaps = 1/22 (4%)
 Frame = +1

Query: 178 VGDMR-KSHIVEAHIRAQIIRR 240
           VGD+R KS ++E+H+RA ++RR
Sbjct: 388 VGDIRTKSQLIESHMRAVVVRR 409


>SB_54030| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 460

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 466 RDKGISCLNSVIAAIEIWVRRLGRLLSACYSRRHRDFDS 350
           RDK +  + SV+A+  + ++ L RL   C S   + +DS
Sbjct: 358 RDKFVELVKSVLASRSVQMKTLQRLAGKCVSFTRKMYDS 396


>SB_41254| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 226

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +1

Query: 442 LNTKFLCLLSIGGFNIREAGEGQKRNTTLLFSRNAVICLRDGEFCLLF 585
           L + F+      GF + EAG   K+N T +  +NAV  +  G    LF
Sbjct: 28  LTSAFIIFTMQSGFGLLEAGMVSKKNETNIMVKNAVDVIYGGLSYWLF 75


>SB_24269| Best HMM Match : PAH (HMM E-Value=3.2)
          Length = 143

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -1

Query: 721 NIHKSECTFNSKTIFFMNTFFVPFYV*SEHARVLPECATFL--YPRRGI 581
           N+ +++C  N +     N+F + F   +E AR+L   AT+   YP  G+
Sbjct: 81  NVLETQCGMNHEERLVFNSFLMLFDSLNEQARLLSVYATYARSYPHLGL 129


>SB_792| Best HMM Match : PAH (HMM E-Value=3.2)
          Length = 63

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -1

Query: 721 NIHKSECTFNSKTIFFMNTFFVPFYV*SEHARVLPECATFL--YPRRGI 581
           N+ +++C  N +     N+F + F   +E AR+L   AT+   YP  G+
Sbjct: 1   NVLETQCGMNHEERLVFNSFLMLFDSLNEQARLLSVYATYARSYPHLGL 49


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,638,823
Number of Sequences: 59808
Number of extensions: 511867
Number of successful extensions: 1098
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)