Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0116
         (742 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58730-1|AAC48058.1|  514|Caenorhabditis elegans Inward rectifyi...    96   2e-20
U40947-5|AAC48070.1|  505|Caenorhabditis elegans Inward rectifyi...    94   8e-20
Z78544-4|CAB01762.3|  374|Caenorhabditis elegans Hypothetical pr...    43   3e-04
AF040647-5|AAR30206.1|  140|Caenorhabditis elegans Hypothetical ...    29   2.6  
U29535-19|AAK31449.2|  252|Caenorhabditis elegans Hypothetical p...    29   3.5  
AF040642-4|AAN73873.2|  319|Caenorhabditis elegans Hypothetical ...    29   4.6  

>U58730-1|AAC48058.1|  514|Caenorhabditis elegans Inward rectifying
           k (potassium)channel family protein 2 protein.
          Length = 514

 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 42/60 (70%), Positives = 54/60 (90%)
 Frame = +1

Query: 67  GIVFAKLSRPKKRAQTLLYSRNAVICLRDGQLCLMFRVGDMRKSHIVEAHIRAQIIRRKV 246
           GI+F+KL+RP KRA TL++S+NAVICLRDG+LCL+FRVGDMRKS + EAH+R Q+I+R V
Sbjct: 215 GIIFSKLARPIKRAATLIFSKNAVICLRDGKLCLLFRVGDMRKSSLAEAHVRLQMIKRCV 274



 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 33/47 (70%), Positives = 41/47 (87%)
 Frame = +1

Query: 511 KRNTTLLFSRNAVICLRDGEFCLLFRVGDIRKSHILEAHVRAQIIRK 651
           KR  TL+FS+NAVICLRDG+ CLLFRVGD+RKS + EAHVR Q+I++
Sbjct: 226 KRAATLIFSKNAVICLRDGKLCLLFRVGDMRKSSLAEAHVRLQMIKR 272


>U40947-5|AAC48070.1|  505|Caenorhabditis elegans Inward rectifying
           k (potassium)channel family protein 1 protein.
          Length = 505

 Score = 94.3 bits (224), Expect = 8e-20
 Identities = 41/59 (69%), Positives = 51/59 (86%)
 Frame = +1

Query: 58  F*VGIVFAKLSRPKKRAQTLLYSRNAVICLRDGQLCLMFRVGDMRKSHIVEAHIRAQII 234
           F VGIVFAK++RPKKRA+T+++S  AVICLRDGQLC + RVGDMR +H+VEAH+R Q I
Sbjct: 205 FMVGIVFAKMARPKKRAETIIFSDKAVICLRDGQLCFLCRVGDMRNTHLVEAHVRLQFI 263



 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 28/46 (60%), Positives = 36/46 (78%)
 Frame = +1

Query: 508 QKRNTTLLFSRNAVICLRDGEFCLLFRVGDIRKSHILEAHVRAQII 645
           +KR  T++FS  AVICLRDG+ C L RVGD+R +H++EAHVR Q I
Sbjct: 218 KKRAETIIFSDKAVICLRDGQLCFLCRVGDMRNTHLVEAHVRLQFI 263


>Z78544-4|CAB01762.3|  374|Caenorhabditis elegans Hypothetical
           protein K04G11.5 protein.
          Length = 374

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
 Frame = +1

Query: 67  GIVFAKLSRPKKRAQTLLYSRNAVI---CLRDGQLCLMFRVGDMR-KSHIVEAHIRAQII 234
           GIV AK+ RPKKR Q + +SR AVI      D +  LM R+ D++ K  + E+H+R  + 
Sbjct: 170 GIVIAKILRPKKRRQEMRFSRMAVIGPLDEHDKRPTLMIRLADIQEKLFLAESHVRLYMA 229

Query: 235 RRKVLC*TKRRLV 273
             K+     R L+
Sbjct: 230 CSKINSRGDRELI 242


>AF040647-5|AAR30206.1|  140|Caenorhabditis elegans Hypothetical
           protein F54D12.9 protein.
          Length = 140

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -3

Query: 473 MDKRQRNFVFKFRDCGNRNLGPSIRASPKRLLQSTPSRFRLSLHYIMES 327
           + ++ +   + FR     N  P IR +PK  +    +  +LSLHYI  S
Sbjct: 47  LSQKDQRITYSFRTMPVSNDSPCIRGTPKCEVADPATCGQLSLHYITTS 95


>U29535-19|AAK31449.2|  252|Caenorhabditis elegans Hypothetical
           protein C25H3.1 protein.
          Length = 252

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 96  KKTRSNSSVLQERRNLFKRRATVSDVPSRRHEKISHSRSS 215
           K+   N++V+++ R + K R T+   P   HE   HSR S
Sbjct: 209 KRFVDNNNVIRQPRKITKFRGTLDFAPIVSHELREHSRGS 248


>AF040642-4|AAN73873.2|  319|Caenorhabditis elegans Hypothetical
           protein C50D2.8 protein.
          Length = 319

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +3

Query: 126 QERRNLFKRRATVSDVPSRRHEKISHSRSSYQS 224
           +ERR      AT SD   RRH   S  RSS+ S
Sbjct: 258 KERREKRAEAATTSDTERRRHRSRSPHRSSHDS 290


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,476,578
Number of Sequences: 27780
Number of extensions: 379501
Number of successful extensions: 840
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)