Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0115
         (653 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    25   0.41 
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    25   0.41 
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    24   0.95 
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    24   0.95 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.7  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    22   3.8  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   6.7  
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    21   8.9  

>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
          protein.
          Length = 287

 Score = 25.4 bits (53), Expect = 0.41
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +3

Query: 3  PPYRHHHGDPPPHSV 47
          P   HHH   PPHSV
Sbjct: 47 PQMWHHHSHMPPHSV 61


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
          protein.
          Length = 249

 Score = 25.4 bits (53), Expect = 0.41
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +3

Query: 3  PPYRHHHGDPPPHSV 47
          P   HHH   PPHSV
Sbjct: 47 PQMWHHHSHMPPHSV 61


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription
          factor homolog protein.
          Length = 276

 Score = 24.2 bits (50), Expect = 0.95
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 3  PPYRHHHGDPPPHSVN 50
          P Y  HHG  PP S N
Sbjct: 25 PHYNIHHGATPPQSPN 40


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 24.2 bits (50), Expect = 0.95
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 24  GDPPPHSVNLGRCRHSQNC 80
           G+P P++VNLG   +++ C
Sbjct: 280 GEPGPYTVNLGSLGYNEIC 298


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 334  APWTTLSWTKSLDSCRLIRSSSTSRP 411
            +PW T + T+   + R   +S+T+RP
Sbjct: 1049 SPWWTTTTTRRTTTTRPTTTSTTTRP 1074



 Score = 21.4 bits (43), Expect = 6.7
 Identities = 5/11 (45%), Positives = 6/11 (54%)
 Frame = -1

Query: 35   WWVAMMVSVWW 3
            WW +   S WW
Sbjct: 1042 WWSSTTTSPWW 1052


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
          protein.
          Length = 126

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 17 PSWRPTTSFC*PWPLP 64
          P++ P  S+C PW  P
Sbjct: 25 PAYSPPPSYCDPWYNP 40


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 502 IIPMTRIGMASIGASFFLLSRPSSVSCTSEPV 407
           ++P  +I ++   +   LL   S VSC SE V
Sbjct: 86  VVPEIKIQISQQQSVTALLDTGSEVSCISEEV 117


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
          protein.
          Length = 366

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = +3

Query: 9  YRHHHGDPPPHSVNLGRCRH 68
          YR+  G   P ++N   C H
Sbjct: 36 YRNGEGSFKPQNINANLCTH 55


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,752
Number of Sequences: 336
Number of extensions: 2861
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)