Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0115
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0128 + 41238510-41239146,41239420-41239461,41240076-412402...    36   0.028
08_02_0958 - 23044708-23046045,23046131-23046363,23047059-230471...    28   7.5  
06_01_0286 - 2094920-2097805                                           28   7.5  
04_01_0223 + 2813129-2814014,2815928-2816309,2816358-2816459,281...    28   7.5  
01_03_0230 - 14004159-14004344,14004422-14004514,14004613-140046...    28   7.5  
08_02_0956 + 23026108-23027146,23027255-23027395,23029334-230295...    27   9.9  
07_03_0062 - 12984079-12984936                                         27   9.9  

>01_07_0128 +
           41238510-41239146,41239420-41239461,41240076-41240297,
           41240909-41241156,41241296-41241435,41241904-41242027
          Length = 470

 Score = 35.9 bits (79), Expect = 0.028
 Identities = 29/86 (33%), Positives = 44/86 (51%)
 Frame = -2

Query: 574 YQGQFGPRSELARQ*SQSSKSQGTIIPMTRIGMASIGASFFLLSRPSSVSCTSEPVGKLN 395
           + GQ   + EL+     S K +G I      G++++GA F LLS+P S+S       K  
Sbjct: 358 WYGQMLAKGELSPDMGDSIKGKGMIQ-----GISAVGAFFELLSQP-SLSVQHPEENKQV 411

Query: 394 WTV*VCMNLKILSMIMLSRELSSRPL 317
               +C  LK L  I++ RELS+R +
Sbjct: 412 APAELCPILKRLYRILIKRELSTRDI 437


>08_02_0958 -
           23044708-23046045,23046131-23046363,23047059-23047199,
           23047296-23048334
          Length = 916

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
 Frame = -1

Query: 596 AK*YPGL--IPRPVWTTIRAC--PP-VEPELQKPGHHHSYDEDRDGEHRCELF 453
           AK YP    IPR   + +R C  PP V P  +KP    S DE+ + E   EL+
Sbjct: 29  AKAYPPANGIPRRADSPVRGCGFPPLVSPPSRKPPSDGSDDEEEEQEDWRELY 81


>06_01_0286 - 2094920-2097805
          Length = 961

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 21/69 (30%), Positives = 28/69 (40%)
 Frame = -1

Query: 359 VHDNVVQGALIQTSRNRLLNFHLIDLRILVFRYGYPPGIDSSSVLATFDRAFASFLFKQF 180
           +  N   GA I      L N   +DL    F    PP + + S L   D +F    F  F
Sbjct: 104 LRSNDFGGARIPAFIGSLKNLRHLDLSFANFGGKIPPQLGNLSKLNYLDISFPYNNFSSF 163

Query: 179 ESSAPVQSL 153
            SS+ V +L
Sbjct: 164 TSSSSVDNL 172


>04_01_0223 +
           2813129-2814014,2815928-2816309,2816358-2816459,
           2816727-2817249
          Length = 630

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = +3

Query: 366 FRFMQTHTVQFNFPTGSDVQETEEGRDKRKKLAPMLAIPILVIGMMVPWLLELWLYWRAS 545
           F+  Q  +  FN    S    T+ G  K+K  A   AI    I +++ W +  W  WR+S
Sbjct: 273 FQLDQILSWSFNSTLASPHPVTK-GHHKKKGAAGKFAIVGAPIFLLLVWSILSWWKWRSS 331

Query: 546 S 548
           S
Sbjct: 332 S 332


>01_03_0230 -
           14004159-14004344,14004422-14004514,14004613-14004673,
           14004761-14004874,14004955-14005206,14005293-14007037
          Length = 816

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = -2

Query: 250 QESTAPQY*PPSIELSRVFSSNNSKA 173
           QE+T P+    S E+SRVF S++SK+
Sbjct: 433 QETTVPEKASTSSEVSRVFRSHDSKS 458


>08_02_0956 +
           23026108-23027146,23027255-23027395,23029334-23029566,
           23029652-23030989
          Length = 916

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
 Frame = -1

Query: 596 AK*YPGL--IPRPVWTTIRAC--PP-VEPELQKPGHHHSYDEDRDGEHRCELF 453
           AK YP    IPR   + +R C  PP V P  +KP    S DE+ + E   EL+
Sbjct: 29  AKAYPPANGIPRRADSPVRGCGFPPLVSPPPRKPPSDGSDDEEEEQEDWRELY 81


>07_03_0062 - 12984079-12984936
          Length = 285

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +3

Query: 396 FNFPTGSDVQETEEGRDKRKKLAPMLAIPILVIGMMVPWLLELWLYWRASSDRGP 560
           F    G D +E    R  R+ L    ++P+ VI ++   L    LYWR   +RGP
Sbjct: 27  FRVFVGYDSREDIAYRVCRRSLLQRSSVPVAVIPIVQQELRSAGLYWR---ERGP 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,851,027
Number of Sequences: 37544
Number of extensions: 363294
Number of successful extensions: 1136
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1126
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)