Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0115
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16163| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_12218| Best HMM Match : PHK_AB (HMM E-Value=2.2e-07)                29   4.4  
SB_12832| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_35399| Best HMM Match : BCL_N (HMM E-Value=7)                       28   5.8  
SB_50523| Best HMM Match : Ras (HMM E-Value=0)                         28   7.6  
SB_17100| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_56043| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_18940| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_12084| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_16163| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 853

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +1

Query: 100 RSSEDSFLGDLKTAYDTYKDCTGAELSNCLKRKLAKALSKVANTEE 237
           ++S + F GDLKT  D Y  C    +    K +  K   + A  E+
Sbjct: 680 KTSMEEFFGDLKTFMDQYSQCKKENMKRQEKEEKEKRAKERAEKEK 725


>SB_12218| Best HMM Match : PHK_AB (HMM E-Value=2.2e-07)
          Length = 732

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
 Frame = -1

Query: 536 PVEPELQKPGHHHSYDEDRDGEHRCELFS----FIAAFFGLLYIGAGREVELDRMSLHES 369
           P +   ++  + HS D    GE+   ++S     +A      ++  G   ELD ++  +S
Sbjct: 29  PRDKVSEEKANPHSVDR-MGGEYAPHMWSQSLYIVACLLQEKFVAMG---ELDPLNRRQS 84

Query: 368 KDFVHDNVVQGALIQTSRNRLLNFHLIDLRILVFRYGYPPGIDSSSVLAT 219
            +   D VVQ AL+    N      L+++ + V R  +P  +  + VL+T
Sbjct: 85  TESRPDVVVQVALLAEDDNVRAQLSLLEVPVQVVRQVHPIQVLPAHVLST 134


>SB_12832| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1169

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/48 (41%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
 Frame = -2

Query: 235 PQY*PPSIELSRV------FSSNNSKALPRCSLCKYRMQSLSPLENCP 110
           P Y  PSIE+  V      +S NNS   P C LCK   Q   P   CP
Sbjct: 321 PGYSCPSIEMGPVTCPEGYYSENNS---PICQLCKPGFQCSDPSGVCP 365


>SB_35399| Best HMM Match : BCL_N (HMM E-Value=7)
          Length = 182

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/36 (27%), Positives = 23/36 (63%)
 Frame = +3

Query: 102 KLRGQFSRGLKDCIRYLQRLHRGRAFELFEEKTRES 209
           ++R + S+  KD   YL+ + + +AF+  E++ R++
Sbjct: 50  RMRTEISQAKKDANFYLESVEKSKAFQAMEDRKRKN 85


>SB_50523| Best HMM Match : Ras (HMM E-Value=0)
          Length = 154

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = +3

Query: 324 LDESSLDNIIMDKIFRFMQTHTVQFNFPTGSDVQETEEGRDKRKKL 461
           ++ S+L NI ++K F  +    +    P    V+ETE+G+ K+KK+
Sbjct: 96  IETSALSNINVEKSFVVLTEDILNAVCPP--TVEETEKGKGKKKKM 139


>SB_17100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +1

Query: 112 DSFLGDLKTAYDTYKDCTGAELS--NCLKRKLAKALSKVANTEELSIPG 252
           D FLGD    Y+TY D    E++  + L R  ++  S +  T + +I G
Sbjct: 18  DEFLGDAYHKYNTYDDDDDMEMNDDDLLSRDTSRVTSGLTFTRKSNISG 66


>SB_56043| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 626

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = -1

Query: 449 FIAAFFGLLYIGAGREVELDRMSLHESKDFVHDNVVQGALIQTSRNRLLNFHLIDL 282
           F+A F   L +G G    +     +E ++ V   V QG++   +R   L+ H +DL
Sbjct: 178 FLATFSTSLLLGYG-VARMSASLFNELRNAVFAKVAQGSIRTVARRTFLHLHNLDL 232


>SB_18940| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 115

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -1

Query: 467 RCELFSFIAAFFGLLYIGAGREVELDRMSLHESKDFVHDNVVQ 339
           R E F F+      + +  GR +E++R++LH   D  + N V+
Sbjct: 41  RVESFGFLTIKGIKVKLKGGRTIEIERVALHTKWDLPNSNYVK 83


>SB_12084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 367

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -2

Query: 487 RIGMASIGASFFLLSRPSSVSCTSEPVGKLNWTV*VCMNLKILS 356
           R G +SIG +F       +VS  +  + +  WT+ +C+NLK +S
Sbjct: 154 RFGDSSIGKAF-----TKAVSVKNAIIRRHRWTIRICINLKQMS 192


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,512,122
Number of Sequences: 59808
Number of extensions: 374677
Number of successful extensions: 1004
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)