Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0115
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46934-4|CAA87042.3|  519|Caenorhabditis elegans Hypothetical pr...    31   0.71 
Z92827-9|CAB54200.1|  510|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z92827-8|CAB07330.1|  527|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z73969-6|CAA98236.1|  295|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z54269-6|CAB54208.1|  510|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z54269-5|CAA91023.1|  527|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U88308-9|AAB42325.1|  933|Caenorhabditis elegans Patched related...    28   6.7  
AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical...    27   8.8  
AL132862-18|CAB70230.2|  481|Caenorhabditis elegans Hypothetical...    27   8.8  

>Z46934-4|CAA87042.3|  519|Caenorhabditis elegans Hypothetical
           protein ZK1320.4 protein.
          Length = 519

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 468 MLAIPILVIGMMVPWLLELWLYWRASSDRGP 560
           +LAIP L IG  + + L +W YWR     GP
Sbjct: 5   LLAIPTLFIGF-ISYYLWIWTYWRRRGIPGP 34


>Z92827-9|CAB54200.1|  510|Caenorhabditis elegans Hypothetical
           protein F02C12.5c protein.
          Length = 510

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 431 GLLYIGAGREVELDRMSLHESKDFVHDN 348
           G +YI  G ++E D MSLH SK+   +N
Sbjct: 399 GDIYIDKGVKIEADVMSLHRSKEIWGEN 426


>Z92827-8|CAB07330.1|  527|Caenorhabditis elegans Hypothetical
           protein F02C12.5a protein.
          Length = 527

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 431 GLLYIGAGREVELDRMSLHESKDFVHDN 348
           G +YI  G ++E D MSLH SK+   +N
Sbjct: 399 GDIYIDKGVKIEADVMSLHRSKEIWGEN 426


>Z73969-6|CAA98236.1|  295|Caenorhabditis elegans Hypothetical
           protein C12D8.8 protein.
          Length = 295

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = -1

Query: 383 SLHESKDFVHDNVVQGALIQTSRNRLLNFHLIDLRILVFRYGYPPGIDSSSVLATFDRAF 204
           SL+ +   +HD V  G  +      L    L+D++I V    YP     SS++    ++F
Sbjct: 28  SLYNTISAIHDEVSSGVSLFRDETDLAWTELMDVQISVSPPSYPRDHPFSSIIRQKRQSF 87

Query: 203 ASF-LFKQFESSAPV 162
           AS   + Q E + P+
Sbjct: 88  ASLPEWCQCEPTKPI 102


>Z54269-6|CAB54208.1|  510|Caenorhabditis elegans Hypothetical
           protein F02C12.5c protein.
          Length = 510

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 431 GLLYIGAGREVELDRMSLHESKDFVHDN 348
           G +YI  G ++E D MSLH SK+   +N
Sbjct: 399 GDIYIDKGVKIEADVMSLHRSKEIWGEN 426


>Z54269-5|CAA91023.1|  527|Caenorhabditis elegans Hypothetical
           protein F02C12.5a protein.
          Length = 527

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 431 GLLYIGAGREVELDRMSLHESKDFVHDN 348
           G +YI  G ++E D MSLH SK+   +N
Sbjct: 399 GDIYIDKGVKIEADVMSLHRSKEIWGEN 426


>U88308-9|AAB42325.1|  933|Caenorhabditis elegans Patched related
           family protein 2 protein.
          Length = 933

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -1

Query: 425 LYIGAGREVELDRMSLHESKDFVHDNVVQGALIQTSR 315
           L+   G + +++RMS+HE      +N + G  +  SR
Sbjct: 55  LFTPLGAQSKMERMSIHEKWPLTDNNYIPGRAVTQSR 91


>AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical
           protein Y66D12A.14 protein.
          Length = 2870

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/21 (61%), Positives = 13/21 (61%)
 Frame = +1

Query: 97  PRSSEDSFLGDLKTAYDTYKD 159
           PRSS  SFL  LKT   T KD
Sbjct: 617 PRSSSTSFLESLKTCQKTLKD 637


>AL132862-18|CAB70230.2|  481|Caenorhabditis elegans Hypothetical
           protein Y73F8A.24 protein.
          Length = 481

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +3

Query: 399 NFPTGSDVQETEEGRDKRKKL 461
           +FPT SDV+ET+E  D+ K L
Sbjct: 68  SFPTASDVEETKEIEDQVKLL 88


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,242,789
Number of Sequences: 27780
Number of extensions: 284086
Number of successful extensions: 823
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)