Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0115
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g47850.1 68415.m05972 zinc finger (CCCH-type) family protein ...    30   1.5  
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ...    30   1.5  
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ...    30   1.5  
At1g12810.1 68414.m01488 proline-rich family protein contains pr...    28   6.2  
At4g32000.1 68417.m04556 protein kinase family protein contains ...    27   8.2  
At3g48430.1 68416.m05287 zinc finger (C2H2 type) family protein ...    27   8.2  
At1g59660.1 68414.m06710 nucleoporin family protein contains Pfa...    27   8.2  

>At2g47850.1 68415.m05972 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 468

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = -1

Query: 638 TLQPGFEAQKSFFQAK*YPGLIPRPVWTTIRACPPVEPELQKPGHHHS 495
           TL PG   Q ++      PG++P P W+   A  PV P L  PG  H+
Sbjct: 203 TLLPGSYMQGAYGPMLLTPGVVPIPGWSPYSA--PVSPAL-SPGAQHA 247


>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
           similar to DNA binding protein GI:1899187 from
           [Nicotiana tabacum]
          Length = 310

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 545 ACPPVEPELQKPGHHHSYDEDRDGEHR 465
           A PP  P  Q P HHH + + R  +H+
Sbjct: 67  APPPFPPYHQYPNHHHLHHQSRGNKHQ 93


>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
           similar to DNA binding protein GI:1899187 from
           [Nicotiana tabacum]
          Length = 432

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 545 ACPPVEPELQKPGHHHSYDEDRDGEHR 465
           A PP  P  Q P HHH + + R  +H+
Sbjct: 67  APPPFPPYHQYPNHHHLHHQSRGNKHQ 93


>At1g12810.1 68414.m01488 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 129

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +3

Query: 6   PYRHHHGDPPPHSVNLGRCRHSQN 77
           P++HH   PPP   N   C H  +
Sbjct: 75  PHQHHGPPPPPPPQNYDHCHHDHH 98


>At4g32000.1 68417.m04556 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 418

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +3

Query: 384 HTVQFNFPTGSDVQETEEGR-DKRKKLAPMLAIPILVIGMMVPWLLELWLYWRASSDR 554
           +T   +F  G  + + +E + D  KKL   L I    +G+++   L  W+YW   S +
Sbjct: 39  YTSMASFSPGIHMGKGQEHKLDAHKKLLIALIITSSSLGLILVSCLCFWVYWSKKSPK 96


>At3g48430.1 68416.m05287 zinc finger (C2H2 type) family protein /
            transcription factor jumonji (jmj) family protein
            contains Pfam domains PF02375: jmjN domain, PF02373: jmjC
            domain and PF00096: Zinc finger, C2H2 type
          Length = 1354

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 554  TIRACPPVEPELQKPGHHHSYDEDRDGE 471
            T+RAC   E  ++    H  YD D D +
Sbjct: 1033 TVRACAASESSMENGSQHSMYDHDDDDD 1060


>At1g59660.1 68414.m06710 nucleoporin family protein contains Pfam
           profiles: PF04096 nucleoporin autopeptidase, PF03093
           nucleoporin FG repeat family
          Length = 997

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 551 IRACPPVEPELQKPGHHHSYDEDRDGEH 468
           IR  PPV+   ++ G H ++  D++G H
Sbjct: 800 IREAPPVKVNQKQNGTHENHGGDKNGSH 827


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,761,237
Number of Sequences: 28952
Number of extensions: 271571
Number of successful extensions: 838
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)