Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0114
         (710 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             143   2e-36
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   6.6  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   6.6  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   6.6  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   8.7  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  143 bits (346), Expect = 2e-36
 Identities = 82/128 (64%), Positives = 93/128 (72%), Gaps = 4/128 (3%)
 Frame = -3

Query: 684 ESSYELPRRVRSSLWETKRFRCPKGFSSQPFVLGYGSLR-HPRDHI*LHH---EVRRGHP 517
           E SYELP     ++   +RFRCP+    QP  LG  +   H   +  +     ++R+   
Sbjct: 12  EKSYELPDGQVITIGN-ERFRCPEALF-QPSFLGMEACGIHETTYNSIMKCDVDIRKD-- 67

Query: 516 *GLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLS 337
             LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPE+KYSVWIGGSILASLS
Sbjct: 68  --LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPEKKYSVWIGGSILASLS 125

Query: 336 TFQQMWIS 313
           TFQQMWIS
Sbjct: 126 TFQQMWIS 133



 Score = 70.1 bits (164), Expect = 2e-14
 Identities = 34/52 (65%), Positives = 36/52 (69%)
 Frame = -1

Query: 665 PDGSGHHYGKRKDSVAQKAFLPNPSFLGMEACGIHETTYNSIMKCDVDIRKD 510
           PDG     G  +    +  F   PSFLGMEACGIHETTYNSIMKCDVDIRKD
Sbjct: 18  PDGQVITIGNERFRCPEALF--QPSFLGMEACGIHETTYNSIMKCDVDIRKD 67


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 496 RIVRWYHHVPWNRRPYAK 443
           RI+ +YH    +++PY K
Sbjct: 424 RIIDYYHSYKMHQKPYNK 441


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 496 RIVRWYHHVPWNRRPYAK 443
           RI+ +YH    +++PY K
Sbjct: 424 RIIDYYHSYKMHQKPYNK 441


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 626 SVAQKAFLPNPSFL 585
           SVAQ+ FLP+  FL
Sbjct: 524 SVAQQQFLPHDDFL 537


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 547 LYVVSWMPQASIPKNEGLGRKA 612
           LYV+SW P   +      G KA
Sbjct: 282 LYVLSWTPYGVMSMIGAFGNKA 303


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,852
Number of Sequences: 438
Number of extensions: 5149
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)