Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0113
         (725 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    24   1.1  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    24   1.1  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    24   1.1  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    24   1.1  
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    23   3.3  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   4.4  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   4.4  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   5.8  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   7.7  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 714  NWGTRGPPLKKVFTELSRRVKVITIGKRK 628
            +WGTR   +KK   EL    K     KRK
Sbjct: 1058 SWGTREVAVKKTKKELEEEKKQAEEAKRK 1086


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 714  NWGTRGPPLKKVFTELSRRVKVITIGKRK 628
            +WGTR   +KK   EL    K     KRK
Sbjct: 1058 SWGTREVAVKKTKKELEEEKKQAEEAKRK 1086


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 714  NWGTRGPPLKKVFTELSRRVKVITIGKRK 628
            +WGTR   +KK   EL    K     KRK
Sbjct: 1058 SWGTREVAVKKTKKELEEEKKQAEEAKRK 1086


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 714  NWGTRGPPLKKVFTELSRRVKVITIGKRK 628
            +WGTR   +KK   EL    K     KRK
Sbjct: 1058 SWGTREVAVKKTKKELEEEKKQAEEAKRK 1086


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 358 STDPYGVLPLWRSNDLN 408
           + DPYG++  W ++ LN
Sbjct: 141 AVDPYGLVAQWATDALN 157


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 13/41 (31%), Positives = 16/41 (39%)
 Frame = -3

Query: 327 QMWISKQEYDESGPSIVHRKCF*TPARRCLQQPAAGCSIQA 205
           Q  +  QEY    PS +H      P     Q   A C +QA
Sbjct: 100 QQQMDGQEYRPDSPSSMHMANTAAPNGHQTQVVYASCKLQA 140


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 338 LPSNRCGSRNRSTTSLAPPLYTG 270
           LP++RC SR  S + + P   +G
Sbjct: 79  LPNSRCNSRESSDSLVQPRCPSG 101


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
 Frame = -3

Query: 714 NWGTRGPP-LKKVFTELSRRVKVITIGKRKDSGCPEALFPTLVLGYGSLRHPRD 556
           N  T G P + KV  ELS   K +  G +  S   E L   LV       HP +
Sbjct: 281 NSTTNGSPDVIKVEPELSDSEKTLCNGSKGISPEQEELIHRLVYFQNEYEHPSE 334


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -2

Query: 634 TKRFRLPRGSLSNPRSWVWK 575
           T R   PR   S+P  W W+
Sbjct: 40  TYRQPYPRQKKSHPPQWTWQ 59


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,627
Number of Sequences: 336
Number of extensions: 4076
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19363530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)