Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0113
(725 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 167 1e-42
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 80 4e-16
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 76 6e-15
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 72 7e-14
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 59 6e-10
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 52 1e-07
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 46 4e-06
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 46 4e-06
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 42 9e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.6
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz... 27 2.7
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S... 26 4.8
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 26 4.8
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 6.3
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 6.3
SPBC2A9.09 |||phosducin family protein|Schizosaccharomyces pombe... 26 6.3
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 25 8.3
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 167 bits (406), Expect = 1e-42
Identities = 88/134 (65%), Positives = 100/134 (74%), Gaps = 3/134 (2%)
Frame = -3
Query: 654 KVITIGKRKDSGCPEALFPTLVLGYGSLRHPRDHI*LHHEVRRGHP*---GLYANTVLSG 484
+VITIG + PEALF LG L + H ++ + + LY N V+SG
Sbjct: 246 QVITIGNERFRA-PEALFQPSALG---LENAGIHEATYNSIMKCDVDIRKDLYGNVVMSG 301
Query: 483 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 304
GTTMYPGIADRMQKEI ALAPS+MK+KI+APPERKYSVWIGGSILASLSTFQQMWISKQE
Sbjct: 302 GTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQE 361
Query: 303 YDESGPSIVHRKCF 262
YDESGP IV+RKCF
Sbjct: 362 YDESGPGIVYRKCF 375
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 79.8 bits (188), Expect = 4e-16
Identities = 36/83 (43%), Positives = 59/83 (71%)
Frame = -3
Query: 510 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 331
LY+N VLSGG+T+ G +R E+ A++ ++KI A PER ++ W+GGSILASLSTF
Sbjct: 298 LYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTF 357
Query: 330 QQMWISKQEYDESGPSIVHRKCF 262
+++ I+ +EY ++ +++ R+ F
Sbjct: 358 RRLLITSEEY-KNDQNVIFRRRF 379
Score = 33.5 bits (73), Expect = 0.031
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -1
Query: 617 AQRLSFQPSFLGMEACGIHETTYNSIMKCDVDIR 516
A + F P +G EA G+H + SI+ D+D+R
Sbjct: 262 APEVLFNPEMMGSEASGLHIQLFKSILLSDIDLR 295
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 75.8 bits (178), Expect = 6e-15
Identities = 37/88 (42%), Positives = 59/88 (67%), Gaps = 6/88 (6%)
Frame = -3
Query: 510 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASL 340
L N ++ GGT++ G + R+Q E++ L P + ++KI A ER Y+ W+GGSIL+SL
Sbjct: 346 LLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSL 404
Query: 339 STFQQMWISKQEYDESGP---SIVHRKC 265
TF Q+WIS+QEY+E G +++ ++C
Sbjct: 405 GTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 72.1 bits (169), Expect = 7e-14
Identities = 35/76 (46%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
Frame = -3
Query: 510 LYANTVLSGGTTMYPGIADRMQKEITALAP-STMKIKIIAPPER-KYSVWIGGSILASLS 337
L N V++GGT++ PG+++R+Q E+ LA S + + +VW GGSILASL
Sbjct: 343 LLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLD 402
Query: 336 TFQQMWISKQEYDESG 289
FQ +W+SKQEYDE G
Sbjct: 403 NFQHLWVSKQEYDEVG 418
Score = 31.9 bits (69), Expect = 0.096
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
Frame = -1
Query: 668 FPDGSRSSLSGNEKIPVAQRLSFQPSFLGMEAC---------GIHETTYNSIMKCDVDIR 516
FPDG G E+ +++ L F PSF + G+HE Y SI+ CD ++R
Sbjct: 283 FPDGVTHKF-GQERFRISEIL-FNPSFSASRSAETTPPQGSVGLHELVYQSILACDSELR 340
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 59.3 bits (137), Expect = 6e-10
Identities = 34/86 (39%), Positives = 53/86 (61%), Gaps = 12/86 (13%)
Frame = -3
Query: 510 LYANTVLSGGTTMYPGIADRMQKEITAL--------APSTM---KIKIIAPPERKYSVWI 364
LY VLSGG++MY G+ R++KEI L P+ + K+KI P R+++V+I
Sbjct: 293 LYRAIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFI 352
Query: 363 GGSILAS-LSTFQQMWISKQEYDESG 289
GG++LA ++ MW+SK E++E G
Sbjct: 353 GGAVLADIMAQNDHMWVSKAEWEEYG 378
Score = 36.7 bits (81), Expect = 0.003
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = -1
Query: 677 LRNF--PDGSRSSLSGNEKIPVAQRLSFQPSFLGMEACGIHETTYNSIMKCDVDIRK 513
+RN+ PDG R G+E+ + L FQP +G E G+ E +++I DVDIRK
Sbjct: 237 MRNYTLPDG-RVIKVGSERYECPECL-FQPHLVGSEQPGLSEFIFDTIQAADVDIRK 291
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 51.6 bits (118), Expect = 1e-07
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Frame = -3
Query: 513 GLYANTVLSGGTTMYPGIADRMQKEITALAPSTMK--------------IKIIAPPERKY 376
GLY N VLSGG+T++ +R+Q+++ + + + +I+ ++
Sbjct: 325 GLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRN 384
Query: 375 SVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 271
+VW GGS+LA F +K +Y+E G SI R
Sbjct: 385 AVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 46.4 bits (105), Expect = 4e-06
Identities = 25/81 (30%), Positives = 40/81 (49%)
Frame = -3
Query: 510 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 331
L N V GG +PG R+ E+ +LAP+ ++K+ P + W S + L +
Sbjct: 319 LLENVVTIGGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHW 377
Query: 330 QQMWISKQEYDESGPSIVHRK 268
I++ EY E G +I+ RK
Sbjct: 378 NANKITRSEYSEHGANIMTRK 398
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 46.4 bits (105), Expect = 4e-06
Identities = 20/78 (25%), Positives = 39/78 (50%)
Frame = -3
Query: 510 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 331
L +N +++GG PG+ R+++E+T++ P I + W G S + F
Sbjct: 634 LVSNVLITGGLGSLPGMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKF 693
Query: 330 QQMWISKQEYDESGPSIV 277
+ ++++EY E GP +
Sbjct: 694 KAAKVTREEYLEKGPEYI 711
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 41.9 bits (94), Expect = 9e-05
Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Frame = -3
Query: 510 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASL 340
LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I +
Sbjct: 529 LYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYNRI 588
Query: 339 STFQQMWISKQEYDESGPSIVHRK 268
++WI ++ G ++ K
Sbjct: 589 RIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -3
Query: 369 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 268
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 27.1 bits (57), Expect = 2.7
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 716 RIGVPGAPPSKKSLRNFPDGSRSSLSGNEKIPVAQRLSFQPSFL 585
R+G G+ S + + DGS S GN+ +L QP+F+
Sbjct: 141 RLGPSGSYQSNAQIVQWSDGSYSLRIGNDIYDTQNKLISQPTFV 184
>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 673
Score = 26.2 bits (55), Expect = 4.8
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +1
Query: 538 MMELYVVSWMPQASIPKNEGWKESLWATG 624
+ ++ V+W P S+P + W L+A G
Sbjct: 141 LCRIHSVAWSPLVSLPSSSPWGVCLFALG 169
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 26.2 bits (55), Expect = 4.8
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = -2
Query: 706 YPGPPPQKSLYGTFPTGQGHHYRETKRF 623
+ PP + Y T+ G GHH + R+
Sbjct: 142 FSAPPRRSRGYNTYGQGSGHHPMDKSRY 169
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 377 TPYGSVDRSSPPSLPSNRCGSRNRSTTSLAPP 282
TP + PPS+PS+R R S ++ APP
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP 254
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 444 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 334
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPBC2A9.09 |||phosducin family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 233
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Frame = -3
Query: 660 RVKVITI-GKRKDSGCPEALFPTLVL-GYGSLR 568
++K + I GK+ PEA+ PTL++ G+G L+
Sbjct: 138 QIKFVKIPGKQAVENYPEAMMPTLLIYGHGDLQ 170
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 8.3
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = -2
Query: 487 RWYHHVPWNRRPYAKGNHSSRPIDNED*DHCSSREEVLRMDRWIDPRLPLYLPTDVDLET 308
RWY PW + KG+ + +E + SSR + + W+D YL +++D+ +
Sbjct: 483 RWYE--PW----FVKGDLN---YTSEVKERTSSRLSAVGSENWVDDDFYEYLLSEIDMVS 533
Query: 307 GV 302
V
Sbjct: 534 AV 535
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,031,828
Number of Sequences: 5004
Number of extensions: 63009
Number of successful extensions: 198
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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