Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0113
(725 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 178 4e-45
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 178 4e-45
SB_56| Best HMM Match : Actin (HMM E-Value=0) 178 4e-45
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 177 6e-45
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 176 1e-44
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 176 2e-44
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 155 5e-38
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 59 4e-09
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 56 3e-08
SB_54| Best HMM Match : Actin (HMM E-Value=0) 50 1e-06
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 6e-06
SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_1944| Best HMM Match : DUF1482 (HMM E-Value=7.3) 32 0.41
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.54
SB_26017| Best HMM Match : Extensin_2 (HMM E-Value=0.11) 31 1.3
SB_32899| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_1597| Best HMM Match : PHD (HMM E-Value=1.4e-05) 29 5.1
SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_23561| Best HMM Match : Hint (HMM E-Value=3.20057e-42) 28 8.9
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 178 bits (433), Expect = 4e-45
Identities = 95/135 (70%), Positives = 105/135 (77%), Gaps = 4/135 (2%)
Frame = -3
Query: 654 KVITIGKRKDSGCPEALFPTLVLGYGSLR-HPRDHI*LHH---EVRRGHP*GLYANTVLS 487
+VITIG + CPEA+F LG S H + + ++R+ LYANTVLS
Sbjct: 209 QVITIGNERFR-CPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKD----LYANTVLS 263
Query: 486 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 307
GGTTMYPGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ
Sbjct: 264 GGTTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 323
Query: 306 EYDESGPSIVHRKCF 262
EYDESGP+IVHRKCF
Sbjct: 324 EYDESGPAIVHRKCF 338
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 178 bits (433), Expect = 4e-45
Identities = 95/135 (70%), Positives = 105/135 (77%), Gaps = 4/135 (2%)
Frame = -3
Query: 654 KVITIGKRKDSGCPEALFPTLVLGYGSLR-HPRDHI*LHH---EVRRGHP*GLYANTVLS 487
+VITIG + CPEA+F LG S H + + ++R+ LYANTVLS
Sbjct: 247 QVITIGNERFR-CPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKD----LYANTVLS 301
Query: 486 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 307
GG+TMYPGIADRMQKEIT+LAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ
Sbjct: 302 GGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 361
Query: 306 EYDESGPSIVHRKCF 262
EYDESGPSIVHRKCF
Sbjct: 362 EYDESGPSIVHRKCF 376
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 178 bits (433), Expect = 4e-45
Identities = 95/135 (70%), Positives = 105/135 (77%), Gaps = 4/135 (2%)
Frame = -3
Query: 654 KVITIGKRKDSGCPEALFPTLVLGYGSLR-HPRDHI*LHH---EVRRGHP*GLYANTVLS 487
+VITIG + CPEA+F LG S H + + ++R+ LYANTVLS
Sbjct: 246 QVITIGNERFR-CPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKD----LYANTVLS 300
Query: 486 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 307
GG+TMYPGIADRMQKEIT+LAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ
Sbjct: 301 GGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 360
Query: 306 EYDESGPSIVHRKCF 262
EYDESGPSIVHRKCF
Sbjct: 361 EYDESGPSIVHRKCF 375
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 177 bits (432), Expect = 6e-45
Identities = 95/135 (70%), Positives = 105/135 (77%), Gaps = 4/135 (2%)
Frame = -3
Query: 654 KVITIGKRKDSGCPEALFPTLVLGYGSLR-HPRDHI*LHH---EVRRGHP*GLYANTVLS 487
+VITIG + CPEA+F LG S H + + ++R+ LYANTVLS
Sbjct: 247 QVITIGNERFR-CPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKD----LYANTVLS 301
Query: 486 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 307
GG+TMYPGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ
Sbjct: 302 GGSTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 361
Query: 306 EYDESGPSIVHRKCF 262
EYDESGPSIVHRKCF
Sbjct: 362 EYDESGPSIVHRKCF 376
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 176 bits (429), Expect = 1e-44
Identities = 94/135 (69%), Positives = 105/135 (77%), Gaps = 4/135 (2%)
Frame = -3
Query: 654 KVITIGKRKDSGCPEALFPTLVLGYGSLR-HPRDHI*LHH---EVRRGHP*GLYANTVLS 487
+VITIG + CPEAL LG S H + + ++R+ LYANTV+S
Sbjct: 220 QVITIGNERFR-CPEALLQPSFLGMESSGIHETTYNSIMKCDVDIRKD----LYANTVMS 274
Query: 486 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 307
GGTTMYPG+ADRMQKEI+ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ
Sbjct: 275 GGTTMYPGLADRMQKEISALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 334
Query: 306 EYDESGPSIVHRKCF 262
EYDESGP+IVHRKCF
Sbjct: 335 EYDESGPAIVHRKCF 349
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 176 bits (428), Expect = 2e-44
Identities = 94/135 (69%), Positives = 105/135 (77%), Gaps = 4/135 (2%)
Frame = -3
Query: 654 KVITIGKRKDSGCPEALFPTLVLGYGSLR-HPRDHI*LHH---EVRRGHP*GLYANTVLS 487
+VITIG + CPEA+F LG S H + + ++R+ LYANTVLS
Sbjct: 246 QVITIGNERFR-CPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKD----LYANTVLS 300
Query: 486 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 307
GG+TM+PGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ
Sbjct: 301 GGSTMFPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 360
Query: 306 EYDESGPSIVHRKCF 262
EYDESGPSIVHRKCF
Sbjct: 361 EYDESGPSIVHRKCF 375
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 155 bits (375), Expect = 5e-38
Identities = 80/134 (59%), Positives = 99/134 (73%), Gaps = 3/134 (2%)
Frame = -3
Query: 654 KVITIGKRKDSGCPEALFPTLVLGYGSLRHPRDHI*LHHEVRRGHP*---GLYANTVLSG 484
+VI+IG + CPEA+F LG + P H +++ + + LY+N VLSG
Sbjct: 20 QVISIGNERFR-CPEAMFQPAFLG---MEAPGIHEAIYNCIMKCDVDIRKDLYSNCVLSG 75
Query: 483 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 304
G+TM+PGIADRMQKEI LA ++MK+K+IAPPERKYSVWIGGSILASLSTFQQMWI+K+E
Sbjct: 76 GSTMFPGIADRMQKEIAMLANASMKVKVIAPPERKYSVWIGGSILASLSTFQQMWIAKEE 135
Query: 303 YDESGPSIVHRKCF 262
Y E GP IVHRKCF
Sbjct: 136 YHEYGPPIVHRKCF 149
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 58.8 bits (136), Expect = 4e-09
Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 16/99 (16%)
Frame = -3
Query: 510 LYANTVLSGGTTMYPGIADRMQKEITA----------------LAPSTMKIKIIAPPERK 379
LY N VLSGG+TM+ R+Q++I + P ++ ++I+ ++
Sbjct: 242 LYKNIVLSGGSTMFRDFGRRLQRDIKRTVDARLKMSETLSGGRIKPKPIETQVISHHMQR 301
Query: 378 YSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 262
Y+VW GGS+LAS F + +K +YDE GPSI F
Sbjct: 302 YAVWFGGSMLASTPEFYSVCHTKADYDEHGPSICRHNPF 340
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 56.0 bits (129), Expect = 3e-08
Identities = 23/61 (37%), Positives = 43/61 (70%), Gaps = 3/61 (4%)
Frame = -3
Query: 513 GLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKII---APPERKYSVWIGGSILAS 343
GL+ + +++GG T+ G +R+ +E+ + P +M++K+I + E++++ WIGGSILAS
Sbjct: 170 GLFNSVIVTGGNTLLQGFVERLNRELVSKTPPSMRLKLISNNSSVEKRFNPWIGGSILAS 229
Query: 342 L 340
L
Sbjct: 230 L 230
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 50.4 bits (115), Expect = 1e-06
Identities = 25/52 (48%), Positives = 35/52 (67%)
Frame = -1
Query: 665 PDGSRSSLSGNEKIPVAQRLSFQPSFLGMEACGIHETTYNSIMKCDVDIRKD 510
PDG +S G+E+ A+ L FQPS LG + GIHE+ + SI KCD+D+R +
Sbjct: 2288 PDG-QSIRIGSERFRAAEPL-FQPSLLGRDIDGIHESIFKSIKKCDIDLRAE 2337
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 48.4 bits (110), Expect = 6e-06
Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Frame = -3
Query: 594 LVLGYGSLRHPRDHI*LHHEVRRGHP*GLYANTVLSGGTTMYPGIADRMQKEITA-LAPS 418
+VL GS +P L E+++ LY VL G T+ Q +TA
Sbjct: 301 IVLSGGSTMYPGLPSRLEREIKQ-----LYLERVLKGDTSKLSSGMGMEQIPLTADYLLQ 355
Query: 417 TMKIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESG 289
KI+I PP RK+ V++GG++LA + W++++EY+E G
Sbjct: 356 KFKIRIEDPPRRKHMVFMGGAVLADIMKDKDSFWMTRKEYEEKG 399
Score = 37.5 bits (83), Expect = 0.011
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = -1
Query: 665 PDGSRSSLSGNEKIPVAQRLSFQPSFLGMEACGIHETTYNSIMKCDVDIRKD 510
PDG LSG E+ + L FQP + +E G+ E +N+I D+D R +
Sbjct: 247 PDGRVVKLSG-ERFEAPEAL-FQPHLINVEGVGVAELLFNTIQAADIDTRSE 296
>SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 39.5 bits (88), Expect = 0.003
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 9/81 (11%)
Frame = -3
Query: 510 LYANTVLSGGTTMYPGIADRMQKEITALAPS--------TMKIKIIAPP-ERKYSVWIGG 358
L N VL GGT M PG R+ +EI L S +K+ PP + W+GG
Sbjct: 77 LAENIVLIGGTAMTPGFKHRLMQEIYLLLQSPKYKDKLFIKTVKMHQPPVNANITAWLGG 136
Query: 357 SILASLSTFQQMWISKQEYDE 295
+I SL +++ Y +
Sbjct: 137 AIFGSLEVLADRSTTRERYQQ 157
>SB_1944| Best HMM Match : DUF1482 (HMM E-Value=7.3)
Length = 491
Score = 32.3 bits (70), Expect = 0.41
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -1
Query: 701 GAPPSKKSLRNFPDGSRSSLSGNEKIPVAQRLSFQP 594
G PPS + + + PDG R SL +P QR S +P
Sbjct: 342 GQPPSLRPVPHLPDGQRPSLRPVTHLPDGQRPSLRP 377
>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 31.9 bits (69), Expect = 0.54
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = -2
Query: 703 PGPPPQKSLYGTFPTGQGHHYRETKRFRLPRGSLSNPRSWVWKLAASTR 557
P PPP S P G R+ R+ G + P SW W+++ R
Sbjct: 78 PPPPPPPSSGPPLPPSNGKCGRKPAGARIINGQNAQPHSWPWQISLRGR 126
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -2
Query: 697 PPPQKSLYGTFPTGQGHHYRETKRFRLPRGSLSNPRSWVWKLAASTR 557
PPP G P +G R+ R+ G + P SW W+++ R
Sbjct: 405 PPPPPPTNG--PPSEGKCGRKPAGARIINGQNAQPHSWPWQISLRGR 449
>SB_26017| Best HMM Match : Extensin_2 (HMM E-Value=0.11)
Length = 1704
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = -2
Query: 706 YPGPPPQKSLYGTFPTGQG---HHYRETKRFRLPRGSLS 599
YP PP Y +P G G + YR + +++ +GSLS
Sbjct: 1290 YPSMPPNAYPYYNYPNGGGDSSNGYRSVQSYKIKKGSLS 1328
>SB_32899| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 79
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = -3
Query: 696 PPLKKVFTELSRRVKVITIGKRKDSGC-PE--ALFPTLVL 586
PP KK+F E+ + +K + RK S C P+ + P+L L
Sbjct: 16 PPPKKIFLEIDKNIKTSLLANRKISECQPQDFGMLPSLFL 55
>SB_4542| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 987
Score = 29.5 bits (63), Expect = 2.9
Identities = 34/135 (25%), Positives = 48/135 (35%)
Frame = -2
Query: 643 YRETKRFRLPRGSLSNPRSWVWKLAASTRPHITPS*SATWTSVRTVRQHRIVRWYHHVPW 464
Y T P + S R+ W L A R H+ S T R++ + HVP
Sbjct: 369 YPLTTAHMFPCVTRSLSRTCYWALYAHYRAHVPRRYSLTHFRAHVPRRYLFTHFRAHVPG 428
Query: 463 NRRPYAKGNHSSRPIDNED*DHCSSREEVLRMDRWIDPRLPLYLPTDVDLETGVRRVWPL 284
+ H P H S + R PL T V + GV R P
Sbjct: 429 HYPLTHFRTHG--PGVTRSLPHTCSWALPAHYRIHVPRRYPL---TTVHMFPGVTRSLPC 483
Query: 283 HCTQEVLLNARASLP 239
C+Q +L + R+ +P
Sbjct: 484 TCSQALLAHYRSHVP 498
>SB_1597| Best HMM Match : PHD (HMM E-Value=1.4e-05)
Length = 763
Score = 28.7 bits (61), Expect = 5.1
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -2
Query: 697 PPPQKSLYGTFPTGQGHHYRETKRFRLPRGSLSNPRS 587
PPP+ + +GT + H R ++LP ++ +PR+
Sbjct: 27 PPPRPTSFGTANSQFNEHRRLLSPYKLPSSNVRHPRA 63
>SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 205
Score = 28.3 bits (60), Expect = 6.7
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 501 NTVLSGGTTMYPGIADRMQKEITALAP 421
N ++GG TMY R+++E+ A+ P
Sbjct: 132 NVFVTGGNTMYNNFMARLERELLAIRP 158
>SB_23561| Best HMM Match : Hint (HMM E-Value=3.20057e-42)
Length = 315
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -1
Query: 707 VPGAPPSKKSLRNFPDGSRSSLSGNEKIPVAQRLSFQPSFLGMEACGIH 561
VP P + S+ FP+ S LS N +IP+ + L ++A G H
Sbjct: 98 VPVIPMKRPSVYCFPESSTVQLSDNHRIPM-KELKIGDRVKTLDARGYH 145
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,881,685
Number of Sequences: 59808
Number of extensions: 543727
Number of successful extensions: 1514
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1504
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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