Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0111
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p...    28   1.6  
SPBC2D10.08c |||mitochondrial ribosomal protein subunit Yml6|Sch...    27   2.7  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    27   3.6  
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   3.6  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    26   6.3  

>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 327 DAVSGIGTDEEAIIEILCTLSNYGIRTISAFYEQLYGKSLESD 455
           DA++ +   +E I E   T  +Y IRT+S  Y+  Y  S   D
Sbjct: 215 DAITSLWDPQELICERSITRMDYPIRTLSFSYDSRYLASGSED 257


>SPBC2D10.08c |||mitochondrial ribosomal protein subunit
           Yml6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 261

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 239 NSRVNYRQLGKCHRRIDDSPAPLLR*GA 322
           + R  YRQ G  H R+ D+ +P+ R GA
Sbjct: 65  SGRKLYRQKGTGHARVGDASSPIRRGGA 92


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 544 LQLKPMLKHWPPAGEGQWGTRRINLQLPSLS 636
           ++L  + KHWP         +R++L +PS+S
Sbjct: 105 IKLSDLQKHWPSLKPHPLPPKRVSLGIPSIS 135


>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
 Frame = +2

Query: 407 HIRILRTTVRQEPGIGLKR-----RHVGTLQEIVRVVVHAN 514
           H++ ++  V QE G  L R          LQE+VRVV+H N
Sbjct: 325 HLQSIKAQVEQERGSRLGRLQELRNSFQQLQELVRVVLHEN 365


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 416  ILRTTVRQEPGIGLKRRHVG 475
            ++ T +  +PG  LK+RH+G
Sbjct: 1171 MMPTNIEHDPGCTLKKRHIG 1190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,689,431
Number of Sequences: 5004
Number of extensions: 52763
Number of successful extensions: 150
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)