Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0110
         (568 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    25   0.60 
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    24   0.79 
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    23   1.4  
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    21   5.6  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   7.3  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   7.3  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   9.7  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   9.7  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   9.7  

>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 24.6 bits (51), Expect = 0.60
 Identities = 12/51 (23%), Positives = 25/51 (49%)
 Frame = +1

Query: 178 VSRERNARPYGMSSEICSS*NTQRCQIAGSLHMTVQTAVLIETLIELGAEV 330
           V  ++ +R    + +IC   + Q C + G+++M     ++I  LI+    V
Sbjct: 219 VKDKKKSRSDEQTIDICMRCHDQLCDMCGAINMLFGFPIIIGCLIQFNTIV 269


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 24.2 bits (50), Expect = 0.79
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -1

Query: 109 VQSLIYLR*IHLLFSFEVIFIKIPEI 32
           VQ+L  +R  ++LFS E + I+IP++
Sbjct: 177 VQTLAAIRINNILFSAEGVEIRIPDV 202


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 290 AVCTVMCKLPAIW 252
           A C ++C  PAIW
Sbjct: 66  ATCNMLCSEPAIW 78


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 403 IYAWKGETDDEYIWCIEQ 456
           ++ W  ETDD + +C E+
Sbjct: 347 VFIWSIETDDMHEFCGEK 364


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 473 SGKINVCSIHQIYSSSVSPF 414
           +GK  +C+IHQ  S   S F
Sbjct: 268 TGKTVICTIHQPSSEVYSMF 287


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 473 SGKINVCSIHQIYSSSVSPF 414
           +GK  +C+IHQ  S   S F
Sbjct: 268 TGKTVICTIHQPSSEVYSMF 287


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -1

Query: 451 QYTKYTRHQFL 419
           Q T YTRHQ L
Sbjct: 236 QRTAYTRHQIL 246


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -1

Query: 451 QYTKYTRHQFL 419
           Q T YTRHQ L
Sbjct: 236 QRTAYTRHQIL 246


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -1

Query: 451 QYTKYTRHQFL 419
           Q T YTRHQ L
Sbjct: 236 QRTAYTRHQIL 246


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,534
Number of Sequences: 336
Number of extensions: 3146
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13995094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)