Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0110
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...   146   1e-36
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    27   1.5  
SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein homolog|Schizos...    27   2.5  
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe...    27   2.5  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    26   4.4  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    25   5.9  

>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score =  146 bits (355), Expect = 1e-36
 Identities = 69/105 (65%), Positives = 82/105 (78%), Gaps = 1/105 (0%)
 Frame = +1

Query: 253 QIAGSLHMTVQTAVLIETLIELGAEVQWSSSNIYSTQDEAAAALVAVGIPIYAWKGETDD 432
           +IAG LHMT+QTAVLIETL+ LGAEV WSS NIYSTQD AAAA+ A G+P++AWKGET++
Sbjct: 48  RIAGCLHMTIQTAVLIETLVALGAEVTWSSCNIYSTQDHAAAAIAATGVPVFAWKGETEE 107

Query: 433 EYIWCIEQTL-IFPDGKPLNMILDDGVT*QT*STLSTPDLLKDVK 564
           EY+WCIEQ L  FP GKPLNMILDDG           P+LL D++
Sbjct: 108 EYLWCIEQQLKSFPSGKPLNMILDDGGDLTALVHERHPELLVDIR 152



 Score = 57.6 bits (133), Expect = 1e-09
 Identities = 26/43 (60%), Positives = 34/43 (79%)
 Frame = +2

Query: 128 YKIADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGAK 256
           YK+AD  LA +GRKE+ +AE EMPGL+A R KYA ++ LKGA+
Sbjct: 6   YKVADISLAAFGRKELEIAENEMPGLIAVREKYAKSQPLKGAR 48


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
 Frame = +2

Query: 26  PIYFRYFNKNNLKRKQQVNLP*VYQTLYYKMKPPYKIADEKL--AEWGRKEIMLAEKEMP 199
           P YF +  KN     +   LP  YQ +  +  PPY     KL     G KE  +A  + P
Sbjct: 8   PYYFTH-EKNLNNASKYSELPIAYQEIPLQSLPPYPKVASKLKGVVAGGKENNIASFQKP 66

Query: 200 GLMACRRKYAPA 235
              A  R Y P+
Sbjct: 67  SSKA-TRPYIPS 77


>SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 196

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 231 GAYFRRHAIRPGISFSANIISFRPHSANFSS 139
           G+  R  A++PG +   +I  +RP   NF+S
Sbjct: 27  GSVRRERAVKPGYTAPEDIKRYRPGRGNFAS 57


>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 19/74 (25%), Positives = 35/74 (47%)
 Frame = +1

Query: 169 RNYVSRERNARPYGMSSEICSS*NTQRCQIAGSLHMTVQTAVLIETLIELGAEVQWSSSN 348
           +N +  E  A  +G+++ IC++    +C I        + A+ +  +  LGAEV   +S 
Sbjct: 397 KNRIIAETGAGQHGVATAICAAKFGMKCTIYMGAEDCRRQALNVFRIRLLGAEVVPVTSG 456

Query: 349 IYSTQDEAAAALVA 390
             + +D    AL A
Sbjct: 457 TQTLRDAVNEALKA 470


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -1

Query: 238 FSWSIFPTTCHKAWHFFLC*HNFFSAPFSQFLVSDFVRRLHFVVQSLIY 92
           ++W  F  T +K  H+FL  H +   P + F+         F V S+++
Sbjct: 363 WTWDQFARTWNKPVHYFLLRHVY--VPLNSFMSKSLSTFFTFFVSSVLH 409


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = -2

Query: 525 LSLLSHPIIQDHIERLSIREDQCLFNTPNILVISFS 418
           LSLL   +I + +E+ +++ +  +F + NIL+  F+
Sbjct: 463 LSLLWDSVIVNILEKCALKNEVTIFESSNILLALFN 498


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,446,378
Number of Sequences: 5004
Number of extensions: 52336
Number of successful extensions: 125
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)