Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0110
         (568 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0204 - 14844634-14844789,14844882-14845418,14846280-14846888     59   3e-09
05_06_0143 + 25970745-25970962,25971053-25971140,25971588-259717...    27   7.9  
02_05_0555 - 29937973-29938395,29938509-29938790                       27   7.9  

>11_04_0204 - 14844634-14844789,14844882-14845418,14846280-14846888
          Length = 433

 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
 Frame = +1

Query: 253 QIAGSLHMTVQTAVLIETLIELGAEVQWSS-SNIYSTQDEAAAALVAVGIPIYAWKGETD 429
           +I+GSLH T+Q AVLIETL  LG         ++                 ++AWKGET 
Sbjct: 21  RISGSLHRTIQAAVLIETLTALGRRGPLVLLQHLLHAGPRRRPPSPRDSAAVFAWKGETL 80

Query: 430 DEYIWCIEQTLIFPDGKPLNMILDDG 507
           +EY WC E+ L +  G   ++I+DDG
Sbjct: 81  EEYWWCTERCLDWGVGAGPDLIVDDG 106



 Score = 32.7 bits (71), Expect = 0.21
 Identities = 12/21 (57%), Positives = 17/21 (80%)
 Frame = +2

Query: 194 MPGLMACRRKYAPAKILKGAK 256
           MPGLMACR ++ P++  KGA+
Sbjct: 1   MPGLMACRAEFGPSQPFKGAR 21


>05_06_0143 +
           25970745-25970962,25971053-25971140,25971588-25971732,
           25972014-25972101,25972179-25972381,25972774-25972913
          Length = 293

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +1

Query: 379 ALVAVGIPIYAWKGETDDEYIWCIEQTLIF 468
           +LVA G+  + W    +D ++W +  +L F
Sbjct: 171 SLVAAGLVCWPWNSAANDNHLWEMNYSLFF 200


>02_05_0555 - 29937973-29938395,29938509-29938790
          Length = 234

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +2

Query: 314 NWEQRYNGPAVTFIVHKTRPQLHWLP*EYPSMPGREKLMTSIF 442
           +WE   +GPA T       P   W P +YP  P +    T ++
Sbjct: 54  HWEVVIDGPAATPYAGGVFPVDVWFPYDYPFRPPKLFFKTKVY 96


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,321,941
Number of Sequences: 37544
Number of extensions: 323454
Number of successful extensions: 718
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)