Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0110
         (568 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19018| Best HMM Match : No HMM Matches (HMM E-Value=.)             155   2e-38
SB_4195| Best HMM Match : No HMM Matches (HMM E-Value=.)               89   2e-18
SB_32965| Best HMM Match : Kazal_1 (HMM E-Value=3.4e-19)               29   2.0  
SB_39834| Best HMM Match : Kazal_1 (HMM E-Value=0)                     29   3.5  
SB_21598| Best HMM Match : DUF1642 (HMM E-Value=9.6)                   28   4.6  
SB_4492| Best HMM Match : PPI_Ypi1 (HMM E-Value=3.8)                   28   6.1  

>SB_19018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 434

 Score =  155 bits (377), Expect = 2e-38
 Identities = 68/85 (80%), Positives = 77/85 (90%)
 Frame = +1

Query: 253 QIAGSLHMTVQTAVLIETLIELGAEVQWSSSNIYSTQDEAAAALVAVGIPIYAWKGETDD 432
           +IAG LHMT+QTAVLIETL ELGAEVQWSS NI+STQD AAAA+   G+P+YAWKGETD+
Sbjct: 51  RIAGCLHMTIQTAVLIETLTELGAEVQWSSCNIFSTQDHAAAAIAKTGVPVYAWKGETDE 110

Query: 433 EYIWCIEQTLIFPDGKPLNMILDDG 507
           EYIWCIEQTL+F DG+PLNMILDDG
Sbjct: 111 EYIWCIEQTLVFKDGQPLNMILDDG 135



 Score = 74.5 bits (175), Expect = 5e-14
 Identities = 33/46 (71%), Positives = 39/46 (84%)
 Frame = +2

Query: 119 KPPYKIADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGAK 256
           K PYK+AD  LAEWGRKEI+LAE EMPGLMA R++Y P+K LKGA+
Sbjct: 6   KLPYKVADISLAEWGRKEIVLAENEMPGLMALRKEYGPSKPLKGAR 51


>SB_4195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 344

 Score = 89.4 bits (212), Expect = 2e-18
 Identities = 38/72 (52%), Positives = 56/72 (77%)
 Frame = +1

Query: 292 VLIETLIELGAEVQWSSSNIYSTQDEAAAALVAVGIPIYAWKGETDDEYIWCIEQTLIFP 471
           VLIETL+ LGA+++W + NIYSTQ+E AAA+   G+ I+AWKGE+++++ WCIE+ +   
Sbjct: 125 VLIETLMALGAQIRWCACNIYSTQNEVAAAMAESGLSIFAWKGESEEDFWWCIEKCITSN 184

Query: 472 DGKPLNMILDDG 507
             +P NM+LDDG
Sbjct: 185 GWQP-NMVLDDG 195


>SB_32965| Best HMM Match : Kazal_1 (HMM E-Value=3.4e-19)
          Length = 69

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -2

Query: 465 DQCLFNTPNILVISFSLPGIDGYSYGNQCSCGLVLCTINVT 343
           D+C+   P    I+  + G DG +YGN+C  G   C  N T
Sbjct: 22  DKCVRPCP---AINDPVCGTDGKTYGNECMLGAATCHSNGT 59


>SB_39834| Best HMM Match : Kazal_1 (HMM E-Value=0)
          Length = 293

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 411 GIDGYSYGNQCSCGLVLCTINVT 343
           G DG +YGN+C  G   C  N T
Sbjct: 57  GTDGKTYGNKCMLGAATCRSNGT 79


>SB_21598| Best HMM Match : DUF1642 (HMM E-Value=9.6)
          Length = 151

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
 Frame = +2

Query: 122 PPYKIADEKLAEWG--RKEIMLAEKEMPG 202
           PP+ +A  +L +WG  RKE++   ++MPG
Sbjct: 119 PPHNVAVTELKDWGQFRKEVVKWLEKMPG 147


>SB_4492| Best HMM Match : PPI_Ypi1 (HMM E-Value=3.8)
          Length = 276

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 489 IERLSIREDQCLFNTPNILV 430
           +ER+ IRE+QC  +TPN  V
Sbjct: 165 VERIRIRENQCQTSTPNCKV 184


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,842,496
Number of Sequences: 59808
Number of extensions: 368728
Number of successful extensions: 792
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)