Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0110
         (568 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    24   0.93 
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    22   3.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   3.7  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   6.5  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +3

Query: 207 WHVVGNMLQLKYSKVPNSRQLTHDSTNSG 293
           WH    +  ++Y+ VP+S  +  D T +G
Sbjct: 77  WHNKTFLAVIRYNGVPSSLNVVSDKTGNG 105


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 303 LNKNRCLYCHV 271
           +N+NRC YC +
Sbjct: 66  INRNRCQYCRL 76


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 303 LNKNRCLYCHV 271
           +N+NRC YC +
Sbjct: 115 INRNRCQYCRL 125


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +1

Query: 274 MTVQTAVLIETLIELGAEVQWSSSNIYSTQ 363
           +TVQ  + +  LIE+  + Q  ++N++  Q
Sbjct: 59  LTVQLGLKLSQLIEMNLKNQVMTTNVWVEQ 88


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,268
Number of Sequences: 438
Number of extensions: 3666
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)