Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0110
(568 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g13940.1 68417.m02157 adenosylhomocysteinase / S-adenosyl-L-h... 107 7e-24
At3g23810.1 68416.m02993 adenosylhomocysteinase, putative / S-ad... 107 7e-24
At1g29980.2 68414.m03666 expressed protein contains Pfam profile... 29 2.2
At1g29980.1 68414.m03667 expressed protein contains Pfam profile... 29 2.2
At1g45191.2 68414.m05184 glycosyl hydrolase family 1 protein Sin... 29 2.9
At2g36480.1 68415.m04477 zinc finger (C2H2-type) family protein ... 28 5.0
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 27 6.6
At5g64860.1 68418.m08159 4-alpha-glucanotransferase, putative / ... 27 8.7
>At4g13940.1 68417.m02157 adenosylhomocysteinase /
S-adenosyl-L-homocysteine hydrolase / AdoHcyase (SAHH)
identical to SP|O23255 Adenosylhomocysteinase (EC
3.3.1.1) (S-adenosyl-L-homocysteine hydrolase)
(AdoHcyase) {Arabidopsis thaliana}; strong similarity to
SP|P50248 Adenosylhomocysteinase (EC 3.3.1.1) {Nicotiana
sylvestris}
Length = 485
Score = 107 bits (256), Expect = 7e-24
Identities = 50/85 (58%), Positives = 62/85 (72%)
Frame = +1
Query: 253 QIAGSLHMTVQTAVLIETLIELGAEVQWSSSNIYSTQDEAAAALVAVGIPIYAWKGETDD 432
+I GSLHMT+QTAVLIETL LGAEV+W S NI+STQD AAAA+ ++AWKGET
Sbjct: 56 RITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSAAVFAWKGETLQ 115
Query: 433 EYIWCIEQTLIFPDGKPLNMILDDG 507
EY WC E+ L + G ++I+DDG
Sbjct: 116 EYWWCTERALDWGPGGGPDLIVDDG 140
Score = 54.0 bits (124), Expect = 7e-08
Identities = 23/43 (53%), Positives = 32/43 (74%)
Frame = +2
Query: 128 YKIADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGAK 256
YK+ D A++GR E+ LAE EMPGLMACR ++ P++ KGA+
Sbjct: 14 YKVKDMSQADFGRLELELAEVEMPGLMACRTEFGPSQPFKGAR 56
>At3g23810.1 68416.m02993 adenosylhomocysteinase, putative /
S-adenosyl-L-homocysteine hydrolase, putative /
AdoHcyase, putative strong similarity to
SP|P50248|SAHH_TOBAC Adenosylhomocysteinase (EC 3.3.1.1)
(S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
{Nicotiana sylvestris}; contains Pfam profile PF00670:
S-adenosyl-L-homocysteine hydrolase, NAD binding domain
Length = 485
Score = 107 bits (256), Expect = 7e-24
Identities = 50/85 (58%), Positives = 62/85 (72%)
Frame = +1
Query: 253 QIAGSLHMTVQTAVLIETLIELGAEVQWSSSNIYSTQDEAAAALVAVGIPIYAWKGETDD 432
+I GSLHMT+QTAVLIETL LGAEV+W S NI+STQD AAAA+ ++AWKGET
Sbjct: 56 RITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHAAAAIARDSAAVFAWKGETLQ 115
Query: 433 EYIWCIEQTLIFPDGKPLNMILDDG 507
EY WC E+ L + G ++I+DDG
Sbjct: 116 EYWWCTERALDWGPGGGPDLIVDDG 140
Score = 50.4 bits (115), Expect = 8e-07
Identities = 22/43 (51%), Positives = 32/43 (74%)
Frame = +2
Query: 128 YKIADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGAK 256
YK+ D A++GR EI LAE EMPGL++C ++ P++ LKGA+
Sbjct: 14 YKVKDMSQADFGRLEIELAEVEMPGLVSCVTEFGPSQPLKGAR 56
>At1g29980.2 68414.m03666 expressed protein contains Pfam profile
PF04862: Protein of unknown function, DUF642
Length = 371
Score = 29.1 bits (62), Expect = 2.2
Identities = 28/128 (21%), Positives = 53/128 (41%), Gaps = 1/128 (0%)
Frame = +1
Query: 178 VSRERNARPYGMSSEICSS*NTQRCQIAGSLHMTVQTAVLIETLIELGAEVQWSSSNIYS 357
V + R+A G +EI ++ + +T +E++ A V + ++ +
Sbjct: 55 VPQGRHAVRLGNDAEISQDLTVEKGFVYSVTFSAARTCAQLESINVSVASVNADADDMLA 114
Query: 358 TQDEAAAALVAV-GIPIYAWKGETDDEYIWCIEQTLIFPDGKPLNMILDDGVT*QT*STL 534
+++ L +V G YAW E +D+++ + + D I+DD L
Sbjct: 115 SRNVDLQTLYSVQGWDPYAWAFEAEDDHVRLVFKNPGMEDDPTCGPIIDDIAI----KKL 170
Query: 535 STPDLLKD 558
TPD KD
Sbjct: 171 FTPDKPKD 178
>At1g29980.1 68414.m03667 expressed protein contains Pfam profile
PF04862: Protein of unknown function, DUF642
Length = 407
Score = 29.1 bits (62), Expect = 2.2
Identities = 28/128 (21%), Positives = 53/128 (41%), Gaps = 1/128 (0%)
Frame = +1
Query: 178 VSRERNARPYGMSSEICSS*NTQRCQIAGSLHMTVQTAVLIETLIELGAEVQWSSSNIYS 357
V + R+A G +EI ++ + +T +E++ A V + ++ +
Sbjct: 91 VPQGRHAVRLGNDAEISQDLTVEKGFVYSVTFSAARTCAQLESINVSVASVNADADDMLA 150
Query: 358 TQDEAAAALVAV-GIPIYAWKGETDDEYIWCIEQTLIFPDGKPLNMILDDGVT*QT*STL 534
+++ L +V G YAW E +D+++ + + D I+DD L
Sbjct: 151 SRNVDLQTLYSVQGWDPYAWAFEAEDDHVRLVFKNPGMEDDPTCGPIIDDIAI----KKL 206
Query: 535 STPDLLKD 558
TPD KD
Sbjct: 207 FTPDKPKD 214
>At1g45191.2 68414.m05184 glycosyl hydrolase family 1 protein Since
this genomic sequence region is unfinished, the
annotated gene may be missing a stop codon or start
codon
Length = 487
Score = 28.7 bits (61), Expect = 2.9
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 340 SSNIYSTQDEAAAALVAVGIPIYAWKGETDDE 435
SS++YS D + GI Y W+G D++
Sbjct: 25 SSDLYSRSDFPEGFVFGAGISAYQWEGAVDED 56
>At2g36480.1 68415.m04477 zinc finger (C2H2-type) family protein
weak similarity to S-locus protein 4 (GI:6069478)
[Brassica rapa]; weak similarity to Pre-mRNA cleavage
complex II protein Pcf11 (Fragment) (Swiss-Prot:O94913)
[Homo sapiens]; contains Prosite PS00028: Zinc finger,
C2H2 type, domain
Length = 828
Score = 27.9 bits (59), Expect = 5.0
Identities = 9/33 (27%), Positives = 18/33 (54%)
Frame = +1
Query: 391 VGIPIYAWKGETDDEYIWCIEQTLIFPDGKPLN 489
+G+P +WK ++E++W + L D +N
Sbjct: 261 IGVPYDSWKNSEEEEFMWDMHSRLSETDVATIN 293
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 27.5 bits (58), Expect = 6.6
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -1
Query: 451 QYTKYTRHQFLPSRHRWVFLRQPVQLRPRLVYY-KCYCWTIVPLLPILL 308
QY + LPSRHR + R+ R L + + +T +PLLP+ L
Sbjct: 643 QYLHHRLRHILPSRHRHLLRRKHTIHRNHLHHNPRNLQFTALPLLPLYL 691
>At5g64860.1 68418.m08159 4-alpha-glucanotransferase, putative /
disproportionating enzyme, putative similar to
4-alpha-glucanotransferase SP:Q06801 from [Solanum
tuberosum]
Length = 576
Score = 27.1 bits (57), Expect = 8.7
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +1
Query: 394 GIPIYAWKGETDDEYIWCIEQ 456
G P+Y WK D+Y W + +
Sbjct: 339 GSPLYDWKAMESDQYSWWVNR 359
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,506,067
Number of Sequences: 28952
Number of extensions: 265395
Number of successful extensions: 625
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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