Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0109
(664 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 31 0.11
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S... 31 0.15
SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomy... 31 0.15
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 31 0.15
SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces po... 31 0.15
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 30 0.34
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 29 0.60
SPBC557.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 28 1.0
SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac... 27 1.8
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 27 1.8
SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr ... 27 1.8
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 27 1.8
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 27 1.8
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei... 27 2.4
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 27 3.2
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 27 3.2
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos... 27 3.2
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p... 27 3.2
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 27 3.2
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc... 27 3.2
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa... 27 3.2
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 26 4.2
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 26 4.2
SPAC27D7.06 |||electron transfer flavoprotein alpha subunit|Schi... 26 4.2
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 26 4.2
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.6
SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces... 26 5.6
SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom... 25 7.4
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo... 25 9.7
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 25 9.7
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces... 25 9.7
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch... 25 9.7
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 25 9.7
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 31.5 bits (68), Expect = 0.11
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 10/94 (10%)
Frame = -1
Query: 253 SEAEDLLGQPCNKTNDDINDSKDELKEQNQKLMDVDESAVK---DTKETENSRKRRRSCV 83
SE+++ L CN + + S +LKE Q +D S K +E EN+ + +
Sbjct: 573 SESKNSLQTLCNAFQEKLAKSVMQLKENEQNFSSLDTSFKKLNESHQELENNHQTITKQL 632
Query: 82 TDT-----PVQDNTAN--EKKKRVDDEKSDKKTK 2
DT +Q AN +K+ + DE +D +TK
Sbjct: 633 KDTSSKLQQLQLERANFEQKESTLSDENNDLRTK 666
>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 31.1 bits (67), Expect = 0.15
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = -1
Query: 220 NKTNDDINDSK-DELKEQNQKLMD--VDESAVKDTKETENSRKRRRSCVTDTPVQDNTAN 50
+KT +N K D KE N L + V+ES+ +TKE NS R ++ NT+
Sbjct: 24 HKTTVHLNSFKNDPKKELNSNLNEKSVEESSKNETKEQFNSSSIPRESESEGKTASNTSP 83
Query: 49 EKKKRVDD 26
K+V++
Sbjct: 84 LSPKKVEN 91
>SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 278
Score = 31.1 bits (67), Expect = 0.15
Identities = 16/68 (23%), Positives = 35/68 (51%)
Frame = -1
Query: 211 NDDINDSKDELKEQNQKLMDVDESAVKDTKETENSRKRRRSCVTDTPVQDNTANEKKKRV 32
N S E K+ ++ + + +K+ K ++ RK+ + TPV ++TA++ +
Sbjct: 192 NSKAGKSSQESKKSSKAPAESAAAVIKEDKVSD--RKKSKKKPKKTPVSNSTASQASENA 249
Query: 31 DDEKSDKK 8
D+K+ +K
Sbjct: 250 SDKKTKEK 257
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 31.1 bits (67), Expect = 0.15
Identities = 18/85 (21%), Positives = 39/85 (45%)
Frame = -1
Query: 256 QSEAEDLLGQPCNKTNDDINDSKDELKEQNQKLMDVDESAVKDTKETENSRKRRRSCVTD 77
++EA++ + + D+ + K+ E N+ + D KDTK T + + V
Sbjct: 402 KTEAKNADSEANLEEKSDVGEEKESKDENNKASLHKDVEE-KDTKITNEDTGKTETDVKA 460
Query: 76 TPVQDNTANEKKKRVDDEKSDKKTK 2
AN+K ++ D ++++ K +
Sbjct: 461 KETDSIEANDKDEKTDSKETEDKVE 485
Score = 25.4 bits (53), Expect = 7.4
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -1
Query: 250 EAEDLLGQPCNKTNDDINDSKDELKEQNQKLMDVDESAVKDTKE 119
E D + Q +K ++ +KD+ KE N+K VD VK+ E
Sbjct: 515 ETADKVEQTDSKDTNE-KPAKDDNKEANEKAEKVDSKDVKEKIE 557
>SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 31.1 bits (67), Expect = 0.15
Identities = 18/67 (26%), Positives = 37/67 (55%)
Frame = -1
Query: 214 TNDDINDSKDELKEQNQKLMDVDESAVKDTKETENSRKRRRSCVTDTPVQDNTANEKKKR 35
+ND +++ L++QN + + D+ +V ++ TE +R T V D+T +E+ K+
Sbjct: 289 SNDSPSNTSLSLQKQNSIVANEDKRSVNGSERTE-TRSSIDQSEMRTNVSDSTKSEELKK 347
Query: 34 VDDEKSD 14
++ K D
Sbjct: 348 INSIKVD 354
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 29.9 bits (64), Expect = 0.34
Identities = 15/72 (20%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Frame = -1
Query: 229 QPCNKTNDDINDSKDELKEQNQKL---MDVDESAVKDTKETENSRKRRRSCVTDTPVQDN 59
+P + ++ N +K+EL +KL MD+ + ++ ++ + + DT + +
Sbjct: 1439 EPSTVSLEEFNSTKEELSSTQRKLSEIMDILNTTKEELEKVRQNSNKSEGTSKDTEIPNE 1498
Query: 58 TANEKKKRVDDE 23
E+KK + E
Sbjct: 1499 EEMERKKVMQQE 1510
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 29.1 bits (62), Expect = 0.60
Identities = 16/66 (24%), Positives = 27/66 (40%)
Frame = -1
Query: 208 DDINDSKDELKEQNQKLMDVDESAVKDTKETENSRKRRRSCVTDTPVQDNTANEKKKRVD 29
DD ++D +E Q+ + E VK +E E + + P D + D
Sbjct: 4156 DDEKMNEDGFEENVQENEESTEDGVKSDEELEQGEVPEDQAIDNHPKMDAKSTFASAEAD 4215
Query: 28 DEKSDK 11
+E +DK
Sbjct: 4216 EENTDK 4221
>SPBC557.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 28.3 bits (60), Expect = 1.0
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -1
Query: 235 LGQPCNKTNDDINDSKDELKEQNQKLMDVDESAVKDT 125
L QP N ND N+ + + N+ L + DE V+ T
Sbjct: 122 LKQPSNCLNDQTNNDSAQTLDDNRALQEFDEQVVQLT 158
>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 265
Score = 27.5 bits (58), Expect = 1.8
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Frame = -1
Query: 220 NKTNDDINDSKDELKEQ----NQKLMDVDESAVKDTKETENSRKRRRSCVTDTPVQDNTA 53
+K N+D+ EL Q ++ D D+S K +E S KRR+ T++ Q++
Sbjct: 94 DKPNNDVEVDYQELLRQTLEADEDASDSDDSVDSSNKNSEVSIKRRK---TESNSQESVD 150
Query: 52 NEKKKRVDDEKSDK 11
+ + D+E +
Sbjct: 151 SSNSESSDEESDSE 164
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -2
Query: 399 KLNEQMRVMIPSFEGEIRVTVKDKSPNTTKDKSRTNSKCSK 277
KL+++ V + + VT K KSPN+T++ N K K
Sbjct: 14 KLSKEPSVELTDTKSSDNVTPKQKSPNSTEEDVSLNLKTLK 54
>SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 384
Score = 27.5 bits (58), Expect = 1.8
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = -2
Query: 510 TQDILDSMQEAEEHIRNISRKYGKFVYPPFRTQFDPAKLNEQMRVMI-PSFEGEIRVTVK 334
T+D+LD +++A N+SR YP + A LNE R +I E + ++
Sbjct: 135 TEDMLDELKKA-----NVSRAVAFSQYPQWSCATSGASLNELRRKLIEKGMEKDFEWSIV 189
Query: 333 DKSP 322
D+ P
Sbjct: 190 DRWP 193
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 27.5 bits (58), Expect = 1.8
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 8/88 (9%)
Frame = -1
Query: 250 EAEDLLGQPCNKTNDDINDSKDELKEQNQKLMDVD---ESAVKDTKETENSRKRR-RSCV 83
+A DL+ + C+ DEL+ ++++M + ES K+T T R+ + S +
Sbjct: 322 KAIDLVDEACSSLRLQQESKPDELRRLDRQIMTIQIELESLRKETDTTSVERREKLESKL 381
Query: 82 TD-TPVQDNTA---NEKKKRVDDEKSDK 11
TD QD + E++K +D K K
Sbjct: 382 TDLKEEQDKLSAAWEEERKLLDSIKKAK 409
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 27.5 bits (58), Expect = 1.8
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Frame = -1
Query: 256 QSEAEDLLGQPCNKTNDDINDSKDELKEQNQKL-MDVDESAVKDTKETENS--RKRRRSC 86
QS + + +P T + + +EL E N + ++ DE++ +T + ++S RKRR+S
Sbjct: 86 QSNESEAIEKPVQSTTE-VELKTNELAESNSSVAVEGDENSYAETPKKKHSLIRKRRKSP 144
Query: 85 VTDTPVQ 65
+ + Q
Sbjct: 145 LDSSSAQ 151
>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 945
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 527 LDPSPSTGSNLWPAPRPDRWGARKNAPS 610
L P PS ++L+P P + G RKN P+
Sbjct: 539 LTPKPSDSNSLYPLPH-SKVGRRKNIPA 565
>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 26.6 bits (56), Expect = 3.2
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Frame = -2
Query: 438 FVYPPFRTQFDPAKLNEQMRVMIPSFEGEIRVTVKDK---SPNTTKDKSRTNSKCSKNST 268
F P R +++ +L E+ + P+F +++ K K +P T K RT + S
Sbjct: 58 FQTPTKRIKYELGELQEEKTDLYPNFPAQLKENKKPKLPTTPQTPKTPKRTIQIVTPKSL 117
Query: 267 N 265
N
Sbjct: 118 N 118
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 26.6 bits (56), Expect = 3.2
Identities = 15/61 (24%), Positives = 28/61 (45%)
Frame = -1
Query: 220 NKTNDDINDSKDELKEQNQKLMDVDESAVKDTKETENSRKRRRSCVTDTPVQDNTANEKK 41
+K ++ + KD+L E NQ+L + ES + SR + T + N N ++
Sbjct: 512 SKQVEEESSMKDDLTEMNQRLKEQIESYENEVNSEITSRTLKEFETLKTQYEKNLCNLRE 571
Query: 40 K 38
+
Sbjct: 572 Q 572
>SPAC222.06 |mak16||nuclear HMG-like acidic protein
Mak16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 26.6 bits (56), Expect = 3.2
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = -1
Query: 193 SKDELKEQNQKLMD-VDESAVKDTKETENSRKRRRSCVTDTPVQDNTANEKKKRVDDEKS 17
S DE +E+ L D + +T E+E D +DN +K++ DD K
Sbjct: 215 SDDEDEEEISDLEDWLGSDQSMETSESEEEESSESESDEDED-EDNKGKIRKRKTDDAKK 273
Query: 16 DKKTK 2
+K +
Sbjct: 274 SRKKR 278
>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 723
Score = 26.6 bits (56), Expect = 3.2
Identities = 15/57 (26%), Positives = 31/57 (54%)
Frame = -1
Query: 205 DINDSKDELKEQNQKLMDVDESAVKDTKETENSRKRRRSCVTDTPVQDNTANEKKKR 35
D DS DE+ E+N++ + D S + ++S ++ + DT +Q+ A E++ +
Sbjct: 349 DEPDSVDEINEENEETPEYDSS--NSSYAQDSSTIPEKTLLKDTFLQNREALEEQNK 403
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -1
Query: 214 TNDDINDSKDELKEQNQKLMDVDESAVKDTKETENSRK 101
++DD DS + L ++++MD+ E A K K+ + K
Sbjct: 61 SDDDEEDSPNALVNTSRQIMDLGEDAEKTIKKKVSENK 98
>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 26.6 bits (56), Expect = 3.2
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Frame = -1
Query: 220 NKTNDDINDSKDELKEQNQKLMDVDESAVKDTKETENSRKRRRSCVTDTP---VQDNTAN 50
N+T+ +++D EQ+Q + D+D ++ + E N S D V +N N
Sbjct: 323 NRTSKELDDLFGSDDEQSQNVNDLDGNSANEENEFINHDGLDSSLDLDGDSYMVDENDLN 382
Query: 49 EKKKRVDDEKSDKKT 5
KKR D+ T
Sbjct: 383 LAKKRKQKALIDRTT 397
>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 199
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -1
Query: 133 KDTKETENSRKRRRSCVTDTPVQDNTANEKKKRVDDEKS 17
K+T + E K S T+TPV++ E+ + +EK+
Sbjct: 139 KNTVKEEEIEKDDESATTETPVKEEPTGEETEADHEEKA 177
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 26.2 bits (55), Expect = 4.2
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = -1
Query: 220 NKTNDDINDSKDELKEQNQKLMDVDESAVKDTKETENS-RKRRRSCVTDTPVQDNTANEK 44
+K + ++ S+ K + +S K +NS KRRR +DTP + T N +
Sbjct: 549 SKKHPALHSSRPSDSRSRSKFGNDYQSHSKHNLFRKNSFPKRRRLSNSDTPSETTTPNNE 608
Query: 43 KKRVDDE 23
+++V ++
Sbjct: 609 QEQVSNQ 615
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 26.2 bits (55), Expect = 4.2
Identities = 15/73 (20%), Positives = 33/73 (45%)
Frame = -1
Query: 220 NKTNDDINDSKDELKEQNQKLMDVDESAVKDTKETENSRKRRRSCVTDTPVQDNTANEKK 41
+K+ D +D E+ + + + + E+S+KR+ ++ + E+K
Sbjct: 388 SKSYIDYSDPNAEVAKPAPVVAPAAPTVEAEVNGVEDSKKRKSVESSEKDEDEAAKKEEK 447
Query: 40 KRVDDEKSDKKTK 2
+R + K +KK K
Sbjct: 448 RRKKEAKKEKKEK 460
>SPAC27D7.06 |||electron transfer flavoprotein alpha
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 341
Score = 26.2 bits (55), Expect = 4.2
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Frame = -2
Query: 471 HIRNISRKYGKFVYPPFRTQFDPAKLNEQMRVMI------PSFEGEIRVTVKDKSP 322
H+ + GK V P FD ++++ + V+ P++ G + VTV K P
Sbjct: 116 HVFSAHSTVGKGVMPRLAAMFDVMQISDIIGVVSADTFVRPTYAGNVNVTVSTKDP 171
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/59 (22%), Positives = 27/59 (45%)
Frame = -1
Query: 205 DINDSKDELKEQNQKLMDVDESAVKDTKETENSRKRRRSCVTDTPVQDNTANEKKKRVD 29
+ N + +++ +KL +VD+ ++ D + + R S T EK+ +VD
Sbjct: 781 EANHELENIEKIEEKLTEVDKVSLSDAFPDQEIKNSRTSVQNGTRSVSKNTPEKETKVD 839
>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -2
Query: 90 PVLQTHRCKTTQPTRKKSESMMKNLIKR 7
PV++ KT +P +KKS+ K L+ +
Sbjct: 452 PVVKPDSIKTVKPEKKKSKGFFKKLMHK 479
>SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -3
Query: 602 RFFGRPTDRAWVPAKDCFLYSEKDPNNF 519
++ +P D W P K F ++K P NF
Sbjct: 134 KYTSQPVDIHWKPGKSLFRKNKKLPPNF 161
>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 25.4 bits (53), Expect = 7.4
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = -3
Query: 527 NNFRTKHRIYWT--ACRKPKSTFVTYRGSMENSSTPPSERNSILQ 399
+NF K ++Y T + +K + F+T E+ PP NS+ Q
Sbjct: 46 DNFDQKTKLYITEESLQKEVNIFLTKIYIRESEREPPQSHNSVFQ 90
>SPBC651.09c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 560
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -1
Query: 214 TNDDINDSKDELKEQNQKLMDVDESAVKDTKETENSRKRRRS-CVTDTPVQDNTA 53
+N + N + D+L + N++ + + ++ ++ N +RR S T TP+ T+
Sbjct: 410 SNQNSNSAMDQLAKVNERNRRRNHTEIRLAEQRMNEERRRLSAAATATPMSAPTS 464
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -1
Query: 226 PCNKTNDDINDSKDELKEQNQKLMDVDESAVKDTKETENS 107
P NDDI ++DEL N DVDE ++ T E +
Sbjct: 370 PSKSLNDDI--TQDELNSSNA---DVDEEVIETTSLEEKN 404
>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 693
Score = 25.0 bits (52), Expect = 9.7
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Frame = -2
Query: 429 PPFRTQFDPAKLNEQMRVMIPSFEGEIRVTVKD-----KSPNTTKDKSRTNSKCSKNSTN 265
P + P ++ EQ + +PS E + D K +K KS K +S
Sbjct: 609 PCLEARPSPNRIQEQPNIDVPSTRYE-NTSSSDAVSIHKDEKKSKGKSHKLGKLMMSSKK 667
Query: 264 GSDKAKQKI 238
DK+K+K+
Sbjct: 668 DKDKSKEKV 676
>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
Nak1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 25.0 bits (52), Expect = 9.7
Identities = 16/61 (26%), Positives = 25/61 (40%)
Frame = -1
Query: 226 PCNKTNDDINDSKDELKEQNQKLMDVDESAVKDTKETENSRKRRRSCVTDTPVQDNTANE 47
P N DSK E+ +L +D S + K T S+ +++ D V +N
Sbjct: 391 PSNAEGASTEDSKGEVSYSQIELPSLDSSNLSSKKSTIQSKHTKQAEDYDLFVGRTRSNS 450
Query: 46 K 44
K
Sbjct: 451 K 451
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 25.0 bits (52), Expect = 9.7
Identities = 14/58 (24%), Positives = 27/58 (46%)
Frame = -1
Query: 175 EQNQKLMDVDESAVKDTKETENSRKRRRSCVTDTPVQDNTANEKKKRVDDEKSDKKTK 2
E+ ++ D + S + K++++ K+ + D P D KK + +K KTK
Sbjct: 56 EELKRSADEEASVKRKEKKSKHEHKKHKK---DKPSADKDRISKKDKKKSKKGKSKTK 110
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,741,996
Number of Sequences: 5004
Number of extensions: 58605
Number of successful extensions: 273
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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