Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0109
(664 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 37 0.014
At1g70620.2 68414.m08137 cyclin-related contains weak similarity... 36 0.018
At1g70620.1 68414.m08138 cyclin-related contains weak similarity... 36 0.018
At2g22795.1 68415.m02704 expressed protein 36 0.024
At4g26630.1 68417.m03837 expressed protein 33 0.13
At4g19190.1 68417.m02832 zinc knuckle (CCHC-type) family protein... 33 0.22
At3g28770.1 68416.m03591 expressed protein 33 0.22
At4g37820.1 68417.m05351 expressed protein Kaposi's sarcoma-asso... 32 0.30
At1g56660.1 68414.m06516 expressed protein 32 0.30
At5g60530.1 68418.m07590 late embryogenesis abundant protein-rel... 32 0.39
At5g55660.1 68418.m06940 expressed protein similar to unknown pr... 32 0.39
At5g36860.1 68418.m04416 Ulp1 protease family protein contains P... 32 0.39
At3g05060.1 68416.m00549 SAR DNA-binding protein, putative stron... 32 0.39
At1g34740.1 68414.m04319 Ulp1 protease family protein contains P... 32 0.39
At1g27780.1 68414.m03399 Ulp1 protease family protein similar to... 32 0.39
At2g14770.2 68415.m01669 Ulp1 protease family protein similar to... 31 0.68
At2g14770.1 68415.m01668 Ulp1 protease family protein similar to... 31 0.68
At5g24880.1 68418.m02946 expressed protein ; expression supporte... 31 0.90
At4g05280.1 68417.m00799 Ulp1 protease family protein contains P... 31 0.90
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID... 31 0.90
At3g57150.1 68416.m06363 dyskerin, putative / nucleolar protein ... 30 1.2
At3g42730.1 68416.m04462 Ulp1 protease family protein contains P... 30 1.2
At3g29075.1 68416.m03637 glycine-rich protein 30 1.2
At3g26580.1 68416.m03318 expressed protein 30 1.2
At1g54440.1 68414.m06210 3'-5' exonuclease domain-containing pro... 30 1.2
At5g53800.1 68418.m06685 expressed protein 29 2.1
At4g08880.1 68417.m01464 Ulp1 protease family protein contains P... 29 2.1
At3g60110.1 68416.m06712 DNA-binding bromodomain-containing prot... 29 2.1
At3g49290.1 68416.m05387 expressed protein 29 2.1
At2g42370.1 68415.m05243 expressed protein 29 2.1
At2g39260.1 68415.m04821 MIF4G domain-containing protein similar... 29 2.1
At2g34300.1 68415.m04196 dehydration-responsive protein-related ... 29 2.1
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu... 29 2.1
At1g12120.1 68414.m01404 expressed protein contains Pfam domain ... 29 2.1
At1g08910.1 68414.m00991 zinc finger (MIZ type) family protein s... 29 2.1
At5g65770.1 68418.m08276 nuclear matrix constituent protein-rela... 29 2.8
At5g50020.1 68418.m06195 zinc finger (DHHC type) family protein ... 29 2.8
At5g17890.1 68418.m02098 LIM domain-containing protein / disease... 29 2.8
At4g26780.1 68417.m03857 co-chaperone grpE family protein simila... 29 2.8
At4g00930.1 68417.m00126 COP1-interacting protein 4.1 (CIP4.1) i... 29 2.8
At5g40340.1 68418.m04894 PWWP domain-containing protein KED, Nic... 29 3.6
At5g17930.1 68418.m02102 MA3 domain-containing protein low simil... 29 3.6
At5g12110.1 68418.m01422 elongation factor 1B alpha-subunit 1 (e... 29 3.6
At3g24390.1 68416.m03063 Ulp1 protease family protein contains P... 29 3.6
At1g67650.1 68414.m07720 expressed protein 29 3.6
At5g41020.1 68418.m04986 myb family transcription factor contain... 28 4.8
At5g27240.1 68418.m03249 DNAJ heat shock N-terminal domain-conta... 28 4.8
At2g44200.1 68415.m05500 expressed protein 28 4.8
At2g39320.1 68415.m04827 OTU-like cysteine protease family prote... 28 4.8
At1g17690.1 68414.m02190 expressed protein 28 4.8
At1g15570.1 68414.m01872 cyclin, putative similar to cyclin A2 [... 28 4.8
At1g12830.1 68414.m01490 expressed protein 28 4.8
At1g08410.1 68414.m00930 GTP-binding family protein contains Pfa... 28 4.8
At5g65460.1 68418.m08232 kinesin motor protein-related contains ... 28 6.4
At5g65180.2 68418.m08199 expressed protein contains Pfam domain,... 28 6.4
At5g65180.1 68418.m08198 expressed protein contains Pfam domain,... 28 6.4
At5g63650.1 68418.m07991 serine/threonine protein kinase, putati... 28 6.4
At5g18510.1 68418.m02185 hypothetical protein 28 6.4
At5g15140.1 68418.m01774 aldose 1-epimerase family protein simil... 28 6.4
At4g22320.1 68417.m03227 expressed protein 28 6.4
At3g28030.1 68416.m03499 UV hypersensitive protein (UVH3) / DNA-... 28 6.4
At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF051... 28 6.4
At2g45520.1 68415.m05661 expressed protein 28 6.4
At2g31850.1 68415.m03889 expressed protein 28 6.4
At2g12875.1 68415.m01402 hypothetical protein 28 6.4
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 27 8.4
At5g53440.1 68418.m06641 expressed protein 27 8.4
At5g48600.1 68418.m06011 structural maintenance of chromosomes (... 27 8.4
At5g19510.1 68418.m02324 elongation factor 1B alpha-subunit 2 (e... 27 8.4
At3g57930.1 68416.m06457 expressed protein 27 8.4
At3g18100.2 68416.m02302 myb family transcription factor (MYB4R1... 27 8.4
At3g18100.1 68416.m02301 myb family transcription factor (MYB4R1... 27 8.4
At2g38300.1 68415.m04705 myb family transcription factor 27 8.4
At2g13540.1 68415.m01493 mRNA cap-binding protein (ABH1) identic... 27 8.4
At1g74250.1 68414.m08599 DNAJ heat shock N-terminal domain-conta... 27 8.4
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 36.7 bits (81), Expect = 0.014
Identities = 19/53 (35%), Positives = 32/53 (60%)
Frame = -1
Query: 196 DSKDELKEQNQKLMDVDESAVKDTKETENSRKRRRSCVTDTPVQDNTANEKKK 38
DSK KEQ KL D DE + K+++ K+R++ + V+ ++++EKKK
Sbjct: 27 DSKKGKKEQKLKLSDSDEEE-SEKKKSKKKDKKRKASEEEDEVKSDSSSEKKK 78
>At1g70620.2 68414.m08137 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
I) [Bos taurus]
Length = 884
Score = 36.3 bits (80), Expect = 0.018
Identities = 18/69 (26%), Positives = 38/69 (55%)
Frame = -1
Query: 208 DDINDSKDELKEQNQKLMDVDESAVKDTKETENSRKRRRSCVTDTPVQDNTANEKKKRVD 29
D NDSKD +KE + K + V+ K++ + ++ S + P + N+ ++ KR +
Sbjct: 737 DSQNDSKDRMKENDLKSAE-KVKGVESNKKSTDPHVKKDSRDVERPHRTNSKEDRGKRKE 795
Query: 28 DEKSDKKTK 2
EK +++++
Sbjct: 796 KEKEEERSR 804
>At1g70620.1 68414.m08138 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
I) [Bos taurus]
Length = 897
Score = 36.3 bits (80), Expect = 0.018
Identities = 18/69 (26%), Positives = 38/69 (55%)
Frame = -1
Query: 208 DDINDSKDELKEQNQKLMDVDESAVKDTKETENSRKRRRSCVTDTPVQDNTANEKKKRVD 29
D NDSKD +KE + K + V+ K++ + ++ S + P + N+ ++ KR +
Sbjct: 707 DSQNDSKDRMKENDLKSAE-KVKGVESNKKSTDPHVKKDSRDVERPHRTNSKEDRGKRKE 765
Query: 28 DEKSDKKTK 2
EK +++++
Sbjct: 766 KEKEEERSR 774
>At2g22795.1 68415.m02704 expressed protein
Length = 734
Score = 35.9 bits (79), Expect = 0.024
Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Frame = -1
Query: 253 SEAEDLLGQPCNKTNDDINDSKDELKEQNQKLMDVDESAVKD-TKETENSRKRRRSCVTD 77
S E+ + K + + ++E KE+ + ++ +ESA ++ TKE E K + ++
Sbjct: 572 SSQEETKEKENEKIEKEESAPQEETKEKENEKIEKEESASQEETKEKETETKEKEESSSN 631
Query: 76 TPVQDNTANEKKKRVDDEKSDKKT 5
Q+N E +K+ E+++KKT
Sbjct: 632 ES-QENVNTESEKKEQVEENEKKT 654
Score = 30.7 bits (66), Expect = 0.90
Identities = 16/71 (22%), Positives = 37/71 (52%)
Frame = -1
Query: 214 TNDDINDSKDELKEQNQKLMDVDESAVKDTKETENSRKRRRSCVTDTPVQDNTANEKKKR 35
++ + N+ K+ K ++ L + E +TKE E S + ++ +T +DN + ++
Sbjct: 480 SSQEKNEDKETEKIESSFLEETKEKE-DETKEKEESSSQEKTEEKETETKDNEESSSQEE 538
Query: 34 VDDEKSDKKTK 2
D++++K K
Sbjct: 539 TKDKENEKIEK 549
Score = 30.7 bits (66), Expect = 0.90
Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Frame = -1
Query: 199 NDSKDELKEQNQKLMDVDESAVKD-TKETENSR--KRRRSCVTDTPVQDNTANEKKKRVD 29
+ S++E KE+ + ++ +ESA ++ TKE EN + K + +T ++ EK++
Sbjct: 571 SSSQEETKEKENEKIEKEESAPQEETKEKENEKIEKEESASQEETKEKETETKEKEESSS 630
Query: 28 DEKSD 14
+E +
Sbjct: 631 NESQE 635
>At4g26630.1 68417.m03837 expressed protein
Length = 763
Score = 33.5 bits (73), Expect = 0.13
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Frame = -1
Query: 250 EAEDLLGQPCNKTNDDINDSKDELKEQNQKLMDVDESA-VKDTKETENSRK--RRRSCVT 80
E++D +TNDD D K+E K ++ V++ +TE +K R+ +
Sbjct: 257 ESKDAKEDEKEETNDDKEDEKEESKGSKKRGKGTSSGGKVREKNKTEEVKKDAEPRTPFS 316
Query: 79 DTPVQDNTANEKKKRVDDEKSDKK 8
D PV++ + E+ + D+ S K+
Sbjct: 317 DRPVRERKSVERLVALIDKDSSKE 340
>At4g19190.1 68417.m02832 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 595
Score = 32.7 bits (71), Expect = 0.22
Identities = 20/61 (32%), Positives = 28/61 (45%)
Frame = -1
Query: 193 SKDELKEQNQKLMDVDESAVKDTKETENSRKRRRSCVTDTPVQDNTANEKKKRVDDEKSD 14
S D + E++QK ES E E+ RR D ++ +EKK R DD S+
Sbjct: 466 SNDPVSEKSQK-QHYSESGKIQRVEKEHRYDERRHRYVDMESENRNRSEKKPRYDDRDSE 524
Query: 13 K 11
K
Sbjct: 525 K 525
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 32.7 bits (71), Expect = 0.22
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Frame = -1
Query: 256 QSEAEDLLGQPCNKTNDDINDSKDE-----LKEQNQKLMDVDESAVKDTKETENSRKRRR 92
+ + E L Q NK +D N+ K +K+++ K + +TKE E+S+ ++
Sbjct: 1117 KKDMEKLEDQNSNKKKEDKNEKKKSQHVKLVKKESDKKEKKENEEKSETKEIESSKSQKN 1176
Query: 91 SCVTDTPVQDNTANEKKKRVDDEKSDKKTK 2
+KK++ E +KK K
Sbjct: 1177 EVDKKEKKSSKDQQKKKEKEMKESEEKKLK 1206
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Frame = -1
Query: 220 NKTNDDINDSKDELKEQNQKLMDVDESAVKDTKETENSRKRRRSCVTDTPVQDNT---AN 50
N+ ++ K+ K +N KL + ++ K+ KE+E+S + R + T A
Sbjct: 969 NELKKQEDNKKETTKSENSKLKEENKDN-KEKKESEDSASKNREKKEYEEKKSKTKEEAK 1027
Query: 49 EKKKRVDDEKSDKK 8
++KK+ D+K ++K
Sbjct: 1028 KEKKKSQDKKREEK 1041
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = -1
Query: 211 NDDINDSKDELKEQNQKLMDVDESAVKDTKETEN-SRKRRRSCVTDTPVQDNTANEKKKR 35
N +D+ + ++ K M +E + K E+ SRK+ ++D +N+KK+
Sbjct: 1075 NHKSKKKEDKKEHEDNKSMKKEEDKKEKKKHEESKSRKKEEDKKDMEKLEDQNSNKKKED 1134
Query: 34 VDDEKSDKKTK 2
+++K + K
Sbjct: 1135 KNEKKKSQHVK 1145
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/71 (21%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = -1
Query: 211 NDDINDSKDELKEQNQKLMDVDESAVKDTKETENSR-KRRRSCVTDTPVQDNTANEKKKR 35
N ++ +++ KE + E K+T ++ENS+ K + +++A++ +++
Sbjct: 953 NSNMKKKEEDKKEYVNNELKKQEDNKKETTKSENSKLKEENKDNKEKKESEDSASKNREK 1012
Query: 34 VDDEKSDKKTK 2
+ E+ KTK
Sbjct: 1013 KEYEEKKSKTK 1023
Score = 27.9 bits (59), Expect = 6.4
Identities = 16/62 (25%), Positives = 33/62 (53%)
Frame = -1
Query: 193 SKDELKEQNQKLMDVDESAVKDTKETENSRKRRRSCVTDTPVQDNTANEKKKRVDDEKSD 14
+K+E K++ +K D KD++E ++ +++ S ++ EKK+ ++ KS
Sbjct: 1022 TKEEAKKEKKKSQDKKREE-KDSEERKSKKEKEESRDLKAKKKEEETKEKKES-ENHKSK 1079
Query: 13 KK 8
KK
Sbjct: 1080 KK 1081
>At4g37820.1 68417.m05351 expressed protein Kaposi's
sarcoma-associated herpes-like virus ORF73gene, Kaposi's
sarcoma-associated herpesvirus, U52064
Length = 532
Score = 32.3 bits (70), Expect = 0.30
Identities = 20/83 (24%), Positives = 38/83 (45%)
Frame = -1
Query: 256 QSEAEDLLGQPCNKTNDDINDSKDELKEQNQKLMDVDESAVKDTKETENSRKRRRSCVTD 77
QS E+ + K D + S+DE KE+ + +ES+ + + E KR + D
Sbjct: 304 QSSEEESKVKESGKNEKDASSSQDESKEEKPERKKKEESSSQGEGKEEEPEKREKE---D 360
Query: 76 TPVQDNTANEKKKRVDDEKSDKK 8
+ Q+ + E+ + + E S +
Sbjct: 361 SSSQEESKEEEPENKEKEASSSQ 383
>At1g56660.1 68414.m06516 expressed protein
Length = 522
Score = 32.3 bits (70), Expect = 0.30
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = -1
Query: 220 NKTNDDINDSKDELKEQNQKLMDVDESAVKDTKETENSRKRRRSCVTDTPVQDNTAN-EK 44
+K+N+D + K + L DE K+ ET+ K + S +D + EK
Sbjct: 204 SKSNEDKKVKGKKEKGEKGDLEKEDEEKKKEHDETDQEMKEKDSKKNKKKEKDESCAEEK 263
Query: 43 KKRVDDEKSDK 11
KK+ D EK +K
Sbjct: 264 KKKPDKEKKEK 274
Score = 27.9 bits (59), Expect = 6.4
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Frame = -1
Query: 190 KDELKE-QNQKLMDVDESAVKDTKETENSRKRRRSCVTDTPVQ--DNTANEKKKRVDDEK 20
K+E K +++K+ E K E E+ K++ TD ++ D+ N+KK++ +
Sbjct: 201 KEESKSNEDKKVKGKKEKGEKGDLEKEDEEKKKEHDETDQEMKEKDSKKNKKKEKDESCA 260
Query: 19 SDKKTK 2
+KK K
Sbjct: 261 EEKKKK 266
>At5g60530.1 68418.m07590 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 439
Score = 31.9 bits (69), Expect = 0.39
Identities = 21/66 (31%), Positives = 32/66 (48%)
Frame = -1
Query: 199 NDSKDELKEQNQKLMDVDESAVKDTKETENSRKRRRSCVTDTPVQDNTANEKKKRVDDEK 20
N KD+ +E+ K E A KD KE E K + + ++ EKK +++ EK
Sbjct: 56 NGPKDKEQEKKDK-----EKAAKDKKEKEKKDKEEK----EKKDKERKEKEKKDKLEKEK 106
Query: 19 SDKKTK 2
DK+ K
Sbjct: 107 KDKERK 112
>At5g55660.1 68418.m06940 expressed protein similar to unknown
protein (pir||T08929)
Length = 778
Score = 31.9 bits (69), Expect = 0.39
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = -1
Query: 211 NDDINDSKDELKEQNQKLMDVDESAVKDTKETENSRKRRRSCVTDTPVQDNTANEKKKRV 32
N D +D ++ LKE+N+ + +E K + E +++ DT V + +KK
Sbjct: 185 NVDEDDKEEALKEKNEAELAEEEETNKGEEVKEANKED--DVEADTKVAEPEVEDKKTES 242
Query: 31 DDEKSDKK 8
DE DK+
Sbjct: 243 KDENEDKE 250
Score = 31.1 bits (67), Expect = 0.68
Identities = 20/83 (24%), Positives = 38/83 (45%)
Frame = -1
Query: 256 QSEAEDLLGQPCNKTNDDINDSKDELKEQNQKLMDVDESAVKDTKETENSRKRRRSCVTD 77
++EAE + NK + +K++ E + K+ + + K + EN K
Sbjct: 198 KNEAELAEEEETNKGEEVKEANKEDDVEADTKVAEPEVEDKKTESKDENEDKEEEKEDEK 257
Query: 76 TPVQDNTANEKKKRVDDEKSDKK 8
D+ +EK++ DD+K D+K
Sbjct: 258 EESMDDKEDEKEESNDDDKEDEK 280
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = -1
Query: 220 NKTNDDINDSKDELKEQN-QKLMDVDESAVKDTKETENSRKRRRSCVTDTPVQDNTANEK 44
+++ ++ D ++E KEQ ++ + +E+ + D E E + ++ + +K
Sbjct: 527 DESEEEKEDDEEEEKEQEVEEEEEENENGIPDKSEDEAPQLSESEENVESEEESEEETKK 586
Query: 43 KKRVDDEKSDKK 8
KKR SDKK
Sbjct: 587 KKRGSRTSSDKK 598
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/83 (19%), Positives = 37/83 (44%)
Frame = -1
Query: 256 QSEAEDLLGQPCNKTNDDINDSKDELKEQNQKLMDVDESAVKDTKETENSRKRRRSCVTD 77
++ ED + ++ D K E K++N+ + E +++ + + K +
Sbjct: 217 EANKEDDVEADTKVAEPEVEDKKTESKDENEDKEEEKEDEKEESMDDKEDEKEESN---- 272
Query: 76 TPVQDNTANEKKKRVDDEKSDKK 8
D+ ++K+ +D+K DKK
Sbjct: 273 ----DDDKEDEKEESNDDKEDKK 291
>At5g36860.1 68418.m04416 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 1204
Score = 31.9 bits (69), Expect = 0.39
Identities = 25/81 (30%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Frame = -2
Query: 492 SMQEAEEHIRNISRKYGKFVYPPFRTQFDP-AKLNEQMRVMIPSFEGEIRVTVKDKSPNT 316
S++E E+ + + FV R DP K EQ IPS + T DK+P T
Sbjct: 469 SLKELEDQMYQMHEDMKDFVRDQIRAALDPKGKRPEQT---IPSHDSREPPTSMDKAPVT 525
Query: 315 TKDKSRTNSKCSKNSTNGSDK 253
K SR S T S +
Sbjct: 526 AKKPSRRMSTKGSTGTRKSSR 546
>At3g05060.1 68416.m00549 SAR DNA-binding protein, putative strong
similarity to SAR DNA-binding protein-1 [Pisum sativum]
GI:3132696; contains Pfam profile PF01798: Putative
snoRNA binding domain
Length = 533
Score = 31.9 bits (69), Expect = 0.39
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = -1
Query: 217 KTNDDINDSKDELKEQNQKLMDVDESAVKDTKETENSRKRRRSCVTDTPVQDNTANEKKK 38
K ++ K + K+ + V E A ++ K+ + RK T+TP + EKKK
Sbjct: 470 KPEEEEPSEKKKKKKAEAETEAVVEVAKEEKKKNKKKRKHEEEETTETPAKKKDKKEKKK 529
Query: 37 RVDD 26
+ D
Sbjct: 530 KSKD 533
>At1g34740.1 68414.m04319 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790, At1g27780,
At5g36850, At3g42730, At1g52020, At3g24390, At4g05280,
At1g25886, At4g03300
Length = 1383
Score = 31.9 bits (69), Expect = 0.39
Identities = 25/81 (30%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Frame = -2
Query: 492 SMQEAEEHIRNISRKYGKFVYPPFRTQFDP-AKLNEQMRVMIPSFEGEIRVTVKDKSPNT 316
S++E E+ + + FV R DP K EQ IPS + T DK+P T
Sbjct: 449 SLKELEDQMYQMHEDMKDFVRDQIRAALDPKGKRPEQT---IPSHDSREPPTSMDKAPVT 505
Query: 315 TKDKSRTNSKCSKNSTNGSDK 253
K SR S T S +
Sbjct: 506 AKKPSRRMSTKGSTGTRKSSR 526
>At1g27780.1 68414.m03399 Ulp1 protease family protein similar to
At3g24380, At5g36840, At5g35010, At3g42740, At4g05290,
At2g14770, At3g43390, At2g05560, At4g08880, At1g34730,
At1g27790, At1g34740, At5g36850, At3g42730, At1g52020,
At3g24390, At4g05280, At1g25886, At4g03300; contains
Pfam profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 1468
Score = 31.9 bits (69), Expect = 0.39
Identities = 25/81 (30%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Frame = -2
Query: 492 SMQEAEEHIRNISRKYGKFVYPPFRTQFDP-AKLNEQMRVMIPSFEGEIRVTVKDKSPNT 316
S++E E+ + + FV R DP K EQ IPS + T DK+P T
Sbjct: 467 SLKELEDQMYQMHEDMKDFVRDQIRATLDPKGKRPEQT---IPSHDSREPPTSMDKAPVT 523
Query: 315 TKDKSRTNSKCSKNSTNGSDK 253
K SR S T S +
Sbjct: 524 AKKPSRRMSTKGSTGTRKSSR 544
>At2g14770.2 68415.m01669 Ulp1 protease family protein similar to
At3g24380, At5g36840, At5g35010, At3g42740, At4g05290,
At2g14770, At3g43390, At2g05560, At4g08880, At1g34730,
At1g27790, At1g34740, At1g27780, At5g36850, At3g42730,
At1g52020, At3g24390, At4g05280, At1g25886, At4g03300;
contains Pfam profile PF02902: Ulp1 protease family,
C-terminal catalytic domain
Length = 1158
Score = 31.1 bits (67), Expect = 0.68
Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
Frame = -2
Query: 492 SMQEAEEHIRNISRKYGKFVYPPFRTQFDP-AKLNEQMRVMIPSFEGEIRVTVKDKSPNT 316
S +E E+ + + FV R DP K EQ IPS + T DK+P T
Sbjct: 469 SFKELEDQMYQMHEDMKDFVRDQIRAALDPKGKRPEQT---IPSHDSREPPTSMDKAPVT 525
Query: 315 TKDKSRTNSKCSKNSTNGSDK 253
K SR S T S +
Sbjct: 526 AKKPSRRMSTKGSTGTRKSSR 546
>At2g14770.1 68415.m01668 Ulp1 protease family protein similar to
At3g24380, At5g36840, At5g35010, At3g42740, At4g05290,
At2g14770, At3g43390, At2g05560, At4g08880, At1g34730,
At1g27790, At1g34740, At1g27780, At5g36850, At3g42730,
At1g52020, At3g24390, At4g05280, At1g25886, At4g03300;
contains Pfam profile PF02902: Ulp1 protease family,
C-terminal catalytic domain
Length = 1139
Score = 31.1 bits (67), Expect = 0.68
Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
Frame = -2
Query: 492 SMQEAEEHIRNISRKYGKFVYPPFRTQFDP-AKLNEQMRVMIPSFEGEIRVTVKDKSPNT 316
S +E E+ + + FV R DP K EQ IPS + T DK+P T
Sbjct: 469 SFKELEDQMYQMHEDMKDFVRDQIRAALDPKGKRPEQT---IPSHDSREPPTSMDKAPVT 525
Query: 315 TKDKSRTNSKCSKNSTNGSDK 253
K SR S T S +
Sbjct: 526 AKKPSRRMSTKGSTGTRKSSR 546
>At5g24880.1 68418.m02946 expressed protein ; expression supported
by MPSS
Length = 443
Score = 30.7 bits (66), Expect = 0.90
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 11/83 (13%)
Frame = -1
Query: 217 KTNDDINDSKDELKEQ--NQKLMDVDESAVK------DTKETENSRKRRRSCVTDTPVQ- 65
K DDI + +E+KEQ NQ +E VK +T E ++ + V +T +
Sbjct: 276 KNEDDIEEKTEEMKEQDNNQANKSEEEEDVKKKIDENETPEKVDTESKEVESVEETTQEK 335
Query: 64 -DNTANEKKKRVDDE-KSDKKTK 2
+ E K+RV++E K +K K
Sbjct: 336 EEEVKEEGKERVEEEEKEKEKVK 358
>At4g05280.1 68417.m00799 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
At1g25886, At4g03300
Length = 1312
Score = 30.7 bits (66), Expect = 0.90
Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
Frame = -2
Query: 492 SMQEAEEHIRNISRKYGKFVYPPFRTQFDP-AKLNEQMRVMIPSFEGEIRVTVKDKSPNT 316
S +E E+ + + FV R DP K EQ IPS + T DK+P T
Sbjct: 415 SFKELEDQMYQMHEDMKDFVRDQIRAVLDPKGKRPEQT---IPSHDSREPPTSMDKAPVT 471
Query: 315 TKDKSRTNSKCSKNSTNGSDK 253
K SR S T S +
Sbjct: 472 AKKPSRRMSTKGSTETRKSSR 492
>At1g67120.1 68414.m07636 midasin-related similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q12019)
[Saccharomyces cerevisiae]; similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
sapiens]; contains Prosite PS00017: ATP/GTP-binding site
motif A (P-loop)
Length = 5336
Score = 30.7 bits (66), Expect = 0.90
Identities = 20/76 (26%), Positives = 36/76 (47%)
Frame = -1
Query: 253 SEAEDLLGQPCNKTNDDINDSKDELKEQNQKLMDVDESAVKDTKETENSRKRRRSCVTDT 74
S+AE +P NK +D ++ +E E ++D KDT+ E K D
Sbjct: 4576 SDAEKADEKPWNKDEEDEEENMNEKNESGPSIVD------KDTRSRELRAKDDGVETADE 4629
Query: 73 PVQDNTANEKKKRVDD 26
P + NT+++ ++ D+
Sbjct: 4630 PEESNTSDKPEEGNDE 4645
>At3g57150.1 68416.m06363 dyskerin, putative / nucleolar protein
NAP57, putative similar to SP|P40615 Dyskerin (Nucleolar
protein NAP57) {Rattus norvegicus}; contains Pfam
profiles PF01509: TruB family pseudouridylate synthase
(N terminal domain), PF01472: PUA domain; supporting
cDNA gi|8901185|gb|AF234984.2|AF234984
Length = 565
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -1
Query: 121 ETENSRKRRRSCVTDTPVQDNTANEKKKRVDDEKSDKKTK 2
E +RKR+ +D+P T K K V+ E++++K K
Sbjct: 435 EAGEARKRKHDDSSDSPAPVTTKKSKTKEVEGEEAEEKVK 474
>At3g42730.1 68416.m04462 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At1g52020, At3g24390, At4g05280,
At1g25886, At4g03300
Length = 1314
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/80 (26%), Positives = 32/80 (40%)
Frame = -2
Query: 492 SMQEAEEHIRNISRKYGKFVYPPFRTQFDPAKLNEQMRVMIPSFEGEIRVTVKDKSPNTT 313
S ++ E+ + + FV R DP ++ + IPS + T DK+P T
Sbjct: 467 SFKKLEDQMYQMQEDMKDFVREQIRAALDPK--GKRPKQTIPSHDSREPPTSMDKAPVTA 524
Query: 312 KDKSRTNSKCSKNSTNGSDK 253
K SR S T S +
Sbjct: 525 KKPSRRMSTKGSTGTRKSSR 544
>At3g29075.1 68416.m03637 glycine-rich protein
Length = 294
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/72 (27%), Positives = 32/72 (44%)
Frame = -1
Query: 217 KTNDDINDSKDELKEQNQKLMDVDESAVKDTKETENSRKRRRSCVTDTPVQDNTANEKKK 38
K D ND DE K++ D DE K ++ K+++ D+ +KKK
Sbjct: 207 KKKKDYNDD-DEKKKKKHYNDDDDEKKKKHNYNDDDDEKKKKK-----EYHDDEDKKKKK 260
Query: 37 RVDDEKSDKKTK 2
D++ +KK K
Sbjct: 261 HYDNDDDEKKKK 272
Score = 27.5 bits (58), Expect = 8.4
Identities = 20/85 (23%), Positives = 41/85 (48%)
Frame = -1
Query: 256 QSEAEDLLGQPCNKTNDDINDSKDELKEQNQKLMDVDESAVKDTKETENSRKRRRSCVTD 77
+ + +D + K DD D K + KE+ +K D + ++++ E +K+++ +
Sbjct: 139 EDDGDDGHKKHSGKDYDD-GDEKSKKKEKEKK-KDKKKDG-NNSEDDEFKKKKKKEQYKE 195
Query: 76 TPVQDNTANEKKKRVDDEKSDKKTK 2
D+ +KKK+ D D+K K
Sbjct: 196 HHDDDDYDEKKKKKKDYNDDDEKKK 220
>At3g26580.1 68416.m03318 expressed protein
Length = 350
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -1
Query: 148 DESAVKDTKETENSRKRRRSCVTDTPVQDNTANEKKKRVDDEKSDKKTK 2
DE ++ + E RKRR DT + A E + ++D+E D + K
Sbjct: 103 DEEEEEEYFDVEKERKRRAKEFHDTKELERKAEELQYKIDEEGDDSEEK 151
>At1g54440.1 68414.m06210 3'-5' exonuclease domain-containing
protein / helicase and RNase D C-terminal
domain-containing protein / HRDC domain-containing
protein similar to SP|Q01780 Polymyositis/scleroderma
autoantigen 2 {Homo sapiens}; contains Pfam profiles
PF00570: HRDC domain, PF01612: 3'-5' exonuclease
Length = 738
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = -1
Query: 211 NDDINDSKDELKEQNQKLMD-VDESAVKDTKETENSRKRRRSCVTDTPVQDNTANEKKKR 35
+DD +D DE EQ+ K D +D + +K + + ++ ++C T+ V D+ ++ + R
Sbjct: 655 DDDDDDDDDESYEQSTKAADALDRVSETPSKGSPSLTQKPKTCNTEVIVLDDD-DDSESR 713
Query: 34 VDDEKSDKKTK 2
D++ + K
Sbjct: 714 EDEDMRRRSEK 724
>At5g53800.1 68418.m06685 expressed protein
Length = 351
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = -1
Query: 217 KTNDDINDSKDELKEQNQKLMDVDESAVKDTKET-ENSRKRRRSCVTDTPVQDNTANEKK 41
+ D + S D E + D +ES +D + + RK R + + ++KK
Sbjct: 99 RRRDYSSSSSDSESESESEYSDSEESESEDERRRRKRKRKEREEEEKERKRRRREKDKKK 158
Query: 40 KRVDDEKSDKKTK 2
+ D+ DKK K
Sbjct: 159 RNKSDKDGDKKRK 171
Score = 27.5 bits (58), Expect = 8.4
Identities = 17/71 (23%), Positives = 35/71 (49%)
Frame = -1
Query: 214 TNDDINDSKDELKEQNQKLMDVDESAVKDTKETENSRKRRRSCVTDTPVQDNTANEKKKR 35
++ + ++S+DE + + +K + +E +E E R+RR D ++K+K
Sbjct: 119 SDSEESESEDERRRRKRKRKEREE------EEKERKRRRREKDKKKRNKSDKDGDKKRKE 172
Query: 34 VDDEKSDKKTK 2
+KS+K K
Sbjct: 173 KKKKKSEKVKK 183
>At4g08880.1 68417.m01464 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At1g34730, At1g27790, At1g34740, At1g27780,
At5g36850, At3g42730, At1g52020, At3g24390, At4g05280,
At1g25886, At4g03300
Length = 1463
Score = 29.5 bits (63), Expect = 2.1
Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
Frame = -2
Query: 492 SMQEAEEHIRNISRKYGKFVYPPFRTQFDP-AKLNEQMRVMIPSFEGEIRVTVKDKSPNT 316
S +E E+ + + FV R DP K EQ IPS + T DK+P T
Sbjct: 333 SFKELEDQMYQMHEDMKDFVRDQIRAAPDPKGKRTEQT---IPSHDSREPPTSMDKAPVT 389
Query: 315 TKDKSRTNSKCSKNSTNGSDK 253
K SR S T S +
Sbjct: 390 GKKPSRRMSTKGSTGTRKSSR 410
>At3g60110.1 68416.m06712 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 438
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = -1
Query: 217 KTNDDINDSKDE-LKEQNQKLMDVDESAVKDTKETENSRKRRRSCVTDTPVQDNTANEKK 41
+++DD +D K+E K + + + D +S K + + ++ T + N N KK
Sbjct: 302 ESSDDDDDEKEENSKTEKKTVADKKKSVADFLKRIKKNSPQKGKETTSKNQKKNDGNVKK 361
Query: 40 KRVDDEKSDKKTK 2
+ +KSD K
Sbjct: 362 ENDHQKKSDGNVK 374
>At3g49290.1 68416.m05387 expressed protein
Length = 312
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/57 (26%), Positives = 29/57 (50%)
Frame = -1
Query: 241 DLLGQPCNKTNDDINDSKDELKEQNQKLMDVDESAVKDTKETENSRKRRRSCVTDTP 71
D LG K ND I++ DE+ E ++ +++ + ++ + ++S V DTP
Sbjct: 72 DHLGSVTYKVNDFIDEKVDEVSETELRVSCIEQRLRMCQEYMDHEGRSQQSLVIDTP 128
>At2g42370.1 68415.m05243 expressed protein
Length = 715
Score = 29.5 bits (63), Expect = 2.1
Identities = 22/70 (31%), Positives = 36/70 (51%)
Frame = -1
Query: 211 NDDINDSKDELKEQNQKLMDVDESAVKDTKETENSRKRRRSCVTDTPVQDNTANEKKKRV 32
+D++ S++ +Q Q L + DE + D+K S SC P + N+KK++
Sbjct: 52 SDEMRKSQENGSDQKQ-LSEEDEIDILDSKAMSFSF----SCHGGGPKRKK-CNDKKRKQ 105
Query: 31 DDEKSDKKTK 2
+EKS KK K
Sbjct: 106 QEEKSKKKLK 115
>At2g39260.1 68415.m04821 MIF4G domain-containing protein similar to
hUPF2 [Homo sapiens] GI:12232320; contains Pfam profile
PF02854: MIF4G domain
Length = 1186
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = -1
Query: 238 LLGQPCNKTNDDINDSKDELKEQNQKLMDVDESAVKDTKE--TENSRKRRRSCVTDTPVQ 65
LLG+ K+N+ +K++L E + ++++ ++ +DT E +++ RS +
Sbjct: 369 LLGEAEPKSNEQSAKAKEKLSESSSEVVE-NQQTTEDTTEVSADSASMDDRSNAEQPKEK 427
Query: 64 DNTANEKKKRVDDEKSDKK 8
+ EK K EK +K
Sbjct: 428 EEVEKEKAKDTKKEKGKEK 446
>At2g34300.1 68415.m04196 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 770
Score = 29.5 bits (63), Expect = 2.1
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = -1
Query: 217 KTNDDINDSKDELKEQNQKLM--DVDESAVKDTKETENSRKRRRSCVTDTPVQDNTANEK 44
K +DD N D KE+N K + + DE+ K+ + E S + +S +D NE+
Sbjct: 121 KESDDNNGDGDGEKEKNVKEVGSESDETTQKEKTQLEESTEENKS-------EDGNGNEE 173
Query: 43 KKRVDDEKSDKKTK 2
K + ++++ T+
Sbjct: 174 KAEENASETEESTE 187
>At1g79280.1 68414.m09242 expressed protein weak similarity to
Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
Length = 2111
Score = 29.5 bits (63), Expect = 2.1
Identities = 24/94 (25%), Positives = 41/94 (43%)
Frame = -1
Query: 304 EQDQF*ML*ELYKWQ*QSEAEDLLGQPCNKTNDDINDSKDELKEQNQKLMDVDESAVKDT 125
+Q Q M E K + + E + N T KDEL +QNQ L +++
Sbjct: 1437 QQAQATMQSEFNKQKQELEKNKKIHYTLNMTKRKYEKEKDELSKQNQSL----AKQLEEA 1492
Query: 124 KETENSRKRRRSCVTDTPVQDNTANEKKKRVDDE 23
KE E ++ V + V++ EK+ ++ D+
Sbjct: 1493 KE-EAGKRTTTDAVVEQSVKEREEKEKRIQILDK 1525
>At1g12120.1 68414.m01404 expressed protein contains Pfam domain
PF05904: Plant protein of unknown function (DUF863)
Length = 483
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = -1
Query: 160 LMDVDESAVKDTKETENSRKRRRSCVTDTPVQDNTANEKKKRVDD 26
LMDVD+S V+D + S++ + TPV ++ + + + D
Sbjct: 165 LMDVDQSLVEDDSDKTTSKESSLLDLNSTPVDESVSEPRYSLLQD 209
>At1g08910.1 68414.m00991 zinc finger (MIZ type) family protein
similar to putative variable cytadhesin protein
(GI:7677312) {Mycoplasma gallisepticum}; contains Pfam
PF02891: MIZ zinc finger domain
Length = 842
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = -3
Query: 596 FGRPTDRAWVPAKDCFLYSEKDPNNF--RTKHRIYWTACRKPKSTFVTYRGSMENSSTPP 423
+G D+ W+P+ + + P N+ T R ++ P++ V YRG+ ++ STP
Sbjct: 581 YGENADQRWMPSS--IAHPQTLPVNYGGNTNQRPIPSSIAHPQTLPVNYRGNTDHRSTPY 638
Query: 422 S 420
S
Sbjct: 639 S 639
>At5g65770.1 68418.m08276 nuclear matrix constituent protein-related
low similarity to nuclear matrix constituent protein 1
(NMCP1) [Daucus carota] GI:2190187
Length = 1042
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = -1
Query: 205 DINDSKDELKEQNQKLMDVDESAVKDTKETENSRKRRRSCVTDTPVQDNTANEKKKRVD 29
DI + L E+ + L+ +E + T E+ ++R R + + +K+KRVD
Sbjct: 449 DITEKSFNLDEKEKNLVATEEDINRKTTMLEDEKERLRKLDLELQQSLTSLEDKRKRVD 507
>At5g50020.1 68418.m06195 zinc finger (DHHC type) family protein
contains Pfam profile PF01529: DHHC zinc finger domain
Length = 407
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/68 (23%), Positives = 34/68 (50%)
Frame = -1
Query: 223 CNKTNDDINDSKDELKEQNQKLMDVDESAVKDTKETENSRKRRRSCVTDTPVQDNTANEK 44
C+K ND + +KE+ + + + + + + E +R+ RR V D D +
Sbjct: 276 CSKVKPSRNDFRAFIKEEPPRNITLATTWERPEEADEENREERRQKVEDDLDIDEDVMKL 335
Query: 43 KKRVDDEK 20
++R++DE+
Sbjct: 336 QQRLNDEE 343
>At5g17890.1 68418.m02098 LIM domain-containing protein / disease
resistance protein-related low similarity to disease
resistance protein RPP4 [Arabidopsis thaliana]
GI:20270890; contains Pfam profiles PF00412: LIM domain,
PF00931: NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1613
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = -1
Query: 196 DSKDELKEQNQKLMDVDESAVKDTKETENSRKRRRSCVTDTPVQDNT--ANEKKKRVDDE 23
D +D++K +++ S + +E E++ K R D +++ K+K++DD+
Sbjct: 1156 DERDQIKHADEREQR-KHSKDHEEEEIESNEKEERRHSKDYVIEELVLKGKGKRKQLDDD 1214
Query: 22 KSDKK 8
K+D+K
Sbjct: 1215 KADEK 1219
>At4g26780.1 68417.m03857 co-chaperone grpE family protein similar
to chaperone GrpE type 2 [Nicotiana tabacum] GI:3851640;
contains Pfam profile PF01025: co-chaperone GrpE
Length = 327
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = -2
Query: 501 ILDSMQEAEEHIRNISRKYGKFVYPPFRTQFDPAKLNEQMRV 376
+L+ ++ E+ + + +K+G Y P FDP + N +V
Sbjct: 239 LLEGVEMTEKQLAEVFKKFGMEKYDPINEPFDPNRHNAVFQV 280
>At4g00930.1 68417.m00126 COP1-interacting protein 4.1 (CIP4.1)
identical to cDNA CIP4.1 mRNA for COP1-interacting
protein 4.1, GI:13160649
Length = 976
Score = 29.1 bits (62), Expect = 2.8
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Frame = -1
Query: 220 NKTNDDINDSKDELKEQNQKLMDVDESAVKDTKETE--NSRKRRRSCVTDTPVQDNTAN- 50
+KT D I D E ++ + +D K K T+ +SRK + DT V N
Sbjct: 573 SKTLDHIGKVTDSEHEVPKERVAIDADQAKSVKSTKKKSSRKAKTPAKEDTLVDSGAQNV 632
Query: 49 EKKKRVDDEKSD 14
E K VD E D
Sbjct: 633 EPIKVVDGEGHD 644
>At5g40340.1 68418.m04894 PWWP domain-containing protein KED,
Nicotiana tabacum, EMBL:AB009883
Length = 1008
Score = 28.7 bits (61), Expect = 3.6
Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Frame = -1
Query: 244 EDLLGQPCNKTNDDINDSKDELKEQNQKLMDVD--ESAVKDTKETENSRKRRRSCVTDTP 71
E+ +P T + E K++ + + + + + +V+ TK+ E RK+ + + P
Sbjct: 776 EETQKEPSESTKKERKRKNPESKKKAEAVEEEETRKESVESTKK-ERKRKKPKHDEEEVP 834
Query: 70 VQDNTANEKKKRVDDEKSDKK 8
+ +KKK+ + KS KK
Sbjct: 835 NETEKPEKKKKKKREGKSKKK 855
>At5g17930.1 68418.m02102 MA3 domain-containing protein low
similarity to SP|Q9P6R9 Cell cycle control protein cwf22
{Schizosaccharomyces pombe}; contains Pfam profile
PF02847: MA3 domain
Length = 707
Score = 28.7 bits (61), Expect = 3.6
Identities = 18/67 (26%), Positives = 30/67 (44%)
Frame = -1
Query: 220 NKTNDDINDSKDELKEQNQKLMDVDESAVKDTKETENSRKRRRSCVTDTPVQDNTANEKK 41
++ D K + E+ Q DVDE A +D + E+ S +D ++KK
Sbjct: 152 SELGDSRKKRKKKRSEEKQDHEDVDELANEDLEHEESEFSDEESEEEPVGKRDRKRHKKK 211
Query: 40 KRVDDEK 20
K+ DE+
Sbjct: 212 KKSVDEE 218
>At5g12110.1 68418.m01422 elongation factor 1B alpha-subunit 1
(eEF1Balpha1) identical to elongation factor 1B
alpha-subunit [Arabidopsis thaliana] GI:6686819
Length = 228
Score = 28.7 bits (61), Expect = 3.6
Identities = 19/57 (33%), Positives = 33/57 (57%)
Frame = -1
Query: 211 NDDINDSKDELKEQNQKLMDVDESAVKDTKETENSRKRRRSCVTDTPVQDNTANEKK 41
+DDI+ DE +++ +K + E+A KDTK+T+ S K S + + D+ + KK
Sbjct: 104 DDDIDLFADETEDE-KKAAEEREAAKKDTKKTKESGK--SSVLLEVKPWDDETDMKK 157
>At3g24390.1 68416.m03063 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At4g05280,
At1g25886, At4g03300
Length = 1139
Score = 28.7 bits (61), Expect = 3.6
Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
Frame = -2
Query: 492 SMQEAEEHIRNISRKYGKFVYPPFRTQFDP-AKLNEQMRVMIPSFEGEIRVTVKDKSPNT 316
S++E E+ + + FV R DP K EQ IPS + DK+P T
Sbjct: 469 SLKELEDQMYPMHEDMKDFVRDQIRAALDPKGKRPEQT---IPSHDSREPPISMDKAPVT 525
Query: 315 TKDKSRTNSKCSKNSTNGSDK 253
K SR S T S +
Sbjct: 526 AKKPSRRMSTKGSTGTRKSSR 546
>At1g67650.1 68414.m07720 expressed protein
Length = 651
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 554 NLWPAPRPDRWGARKNAPSTRPARTHRHA 640
N P P P+RW R+ S RP R + A
Sbjct: 574 NSGPTPDPERWLPRRERSSYRPKRKDKRA 602
>At5g41020.1 68418.m04986 myb family transcription factor contains
Pfam profile: PF00249 Myb DNA binding domain
Length = 588
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = -1
Query: 208 DDINDSKDELKEQNQKL-MDVDESAVKDTKETENSRKRRRSCVTDTPVQDNTANEKKKRV 32
D ND K + K++ Q + +E+ + TK+ + RK+++ + + A EK +
Sbjct: 205 DSTNDGKKKRKKKKQSEDSETEENGLNSTKDAKKRRKKKKK---KKQSEVSEAEEKSDKS 261
Query: 31 DDEKSDKKT 5
D++ + T
Sbjct: 262 DEDLTTPST 270
>At5g27240.1 68418.m03249 DNAJ heat shock N-terminal
domain-containing protein
Length = 1104
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = -2
Query: 345 VTVKDKSPNTTKDKSRTNSKCSKN-STNGSDKAKQKIY 235
V+ D++P+T+KDK++ ++ + +GSD K K Y
Sbjct: 310 VSRSDEAPSTSKDKNKMKKGVEESINVDGSDFIKDKAY 347
>At2g44200.1 68415.m05500 expressed protein
Length = 493
Score = 28.3 bits (60), Expect = 4.8
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -1
Query: 196 DSKDELKEQNQKLMDVDESAVKDT-KETENSRKRRRSCVTDTPV-QDNTANEK 44
D + + +E + K + S + D K E+ KRRRS + D P +D NEK
Sbjct: 300 DDESKRRESHDKHFERQRSDLDDEYKRRESQDKRRRSDIDDEPKRRDARPNEK 352
>At2g39320.1 68415.m04827 OTU-like cysteine protease family protein
contains Pfam profile PF02338: OTU-like cysteine
protease
Length = 189
Score = 28.3 bits (60), Expect = 4.8
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = -1
Query: 178 KEQNQKLMDVDESAV--KDTKETENSRKRRRSCVTDTPVQDNTANEKKKRVDDEKSDKKT 5
KE+ + SAV K ++ EN K++ + +D EKKK +D+K DK+
Sbjct: 105 KEKGSRSSSSSSSAVWMKLQRKKENEAKKKEE--EEKERKDMEKEEKKKDKEDKKKDKED 162
Query: 4 K 2
K
Sbjct: 163 K 163
>At1g17690.1 68414.m02190 expressed protein
Length = 754
Score = 28.3 bits (60), Expect = 4.8
Identities = 17/69 (24%), Positives = 36/69 (52%)
Frame = -1
Query: 214 TNDDINDSKDELKEQNQKLMDVDESAVKDTKETENSRKRRRSCVTDTPVQDNTANEKKKR 35
T +D D +DE +E+N D+ + +D K ++ + +TD +DN +++
Sbjct: 94 TEED-EDDEDEDEEENSGSDDLSSTDGEDDK-SQGDDQETLGGLTDDTQEDNDNQSEEED 151
Query: 34 VDDEKSDKK 8
DD ++D++
Sbjct: 152 PDDYETDEE 160
>At1g15570.1 68414.m01872 cyclin, putative similar to cyclin A2
[Lycopersicon esculentum] GI:5420276, cyclin [Medicago
sativa] GI:1050559; contains Pfam profiles PF00134:
Cyclin, N-terminal domain, PF02984: Cyclin, C-terminal
domain
Length = 450
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -1
Query: 172 QNQKLMDVDESAVKDTKET-ENSRKRRRSCVTDTPVQDNTA 53
QNQ+ ++ A++DT+ T N RK+R T V NTA
Sbjct: 29 QNQQRVNTKRPALEDTRATGPNKRKKRAVLGEITNVNSNTA 69
>At1g12830.1 68414.m01490 expressed protein
Length = 213
Score = 28.3 bits (60), Expect = 4.8
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Frame = -1
Query: 208 DDINDSKDE--LKEQNQKLMDVDESAVKDTKETENSRKRRRSCVTDTPVQDNTANEKKKR 35
DD +D +D+ E ++ D A D SR RRRS + + +N
Sbjct: 144 DDSDDDEDDEGFDEDDESDFSDDPLAEVDLDNILPSRTRRRSSQPGVFIPNEFSNRHVND 203
Query: 34 VDDEKSD 14
DDE SD
Sbjct: 204 EDDESSD 210
>At1g08410.1 68414.m00930 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 589
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -1
Query: 148 DESAVKDTKETENSRKRRRSCVTDTPVQDNTANEKKKRVDDEKSD 14
DE ++DT+E E+ + S D+ V D T NE+ +DD D
Sbjct: 479 DEPDIEDTQELEDILEGSES--DDSAVGDETENEQVPGIDDVLDD 521
>At5g65460.1 68418.m08232 kinesin motor protein-related contains
similarity to kinesin heavy chain
Length = 1281
Score = 27.9 bits (59), Expect = 6.4
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = -1
Query: 256 QSEAEDLLGQPCNKTNDDINDSKDELKEQNQKLMD-VDESAVKDTKETENSRKRRRSCV 83
QS+ +DL Q D+ S+D L+ Q + + +D SAV TK+ E K+R + +
Sbjct: 592 QSKVKDLESQLSKALKSDMTRSRDPLEPQPRAAENTLDSSAV--TKKLEEELKKRDALI 648
>At5g65180.2 68418.m08199 expressed protein contains Pfam domain,
PF04818: Protein of unknown function, DUF618
Length = 311
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/48 (22%), Positives = 26/48 (54%)
Frame = -1
Query: 202 INDSKDELKEQNQKLMDVDESAVKDTKETENSRKRRRSCVTDTPVQDN 59
+N ++ L+EQ +L ++ ++TE ++ ++ +TPV +N
Sbjct: 122 VNHLREALREQESELENLQSQIQVAQEQTEEAQNMQKRLNNETPVNNN 169
>At5g65180.1 68418.m08198 expressed protein contains Pfam domain,
PF04818: Protein of unknown function, DUF618
Length = 439
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/48 (22%), Positives = 26/48 (54%)
Frame = -1
Query: 202 INDSKDELKEQNQKLMDVDESAVKDTKETENSRKRRRSCVTDTPVQDN 59
+N ++ L+EQ +L ++ ++TE ++ ++ +TPV +N
Sbjct: 250 VNHLREALREQESELENLQSQIQVAQEQTEEAQNMQKRLNNETPVNNN 297
>At5g63650.1 68418.m07991 serine/threonine protein kinase, putative
similar to serine/threonine-protein kinase
ASK2[Arabidopsis thaliana], SWISS-PROT:P43292; contains
protein kinase domain, Pfam:PF00069
Length = 360
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -1
Query: 211 NDDINDSKDELKEQNQKLMDVDESAVKDTKETENSRKRRRSC 86
+DD D +DE++E+ ++ + +E ++ E E K SC
Sbjct: 313 DDDEEDVEDEVEEEEEEEEEEEEEEEEEEDEYEKHVKEAHSC 354
>At5g18510.1 68418.m02185 hypothetical protein
Length = 702
Score = 27.9 bits (59), Expect = 6.4
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Frame = -1
Query: 208 DDINDSKDELKEQNQKLMDVDESAVKDTKETENSRKRRRSCVTDT----PVQDNTANEKK 41
DD ++ +N+ DVD+ D E+ R RR V P Q + + +
Sbjct: 526 DDCMTVAQLIRSRNKYFSDVDKKTGGDASESLGKRSRRYMLVDSDDDSGPCQKHALMKVE 585
Query: 40 KR-VDDEKSDKKTK 2
+R V+D+ + KKT+
Sbjct: 586 QRSVEDDGTTKKTE 599
>At5g15140.1 68418.m01774 aldose 1-epimerase family protein similar
to SP|P05149 Aldose 1-epimerase precursor (EC 5.1.3.3)
(Mutarotase) from Acinetobacter calcoaceticus; contains
Pfam profile PF01263 Aldose 1-epimerase
Length = 490
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/59 (28%), Positives = 28/59 (47%)
Frame = -1
Query: 184 ELKEQNQKLMDVDESAVKDTKETENSRKRRRSCVTDTPVQDNTANEKKKRVDDEKSDKK 8
ELK ++ + D+ D+ E ++ +D +DN EKKK D +K DK+
Sbjct: 29 ELKSKDLESSKKDKKVDHDSTHKEKGGEKVDGAGSDD--EDNDKKEKKKEHDVQKKDKQ 85
>At4g22320.1 68417.m03227 expressed protein
Length = 238
Score = 27.9 bits (59), Expect = 6.4
Identities = 16/67 (23%), Positives = 32/67 (47%)
Frame = -1
Query: 220 NKTNDDINDSKDELKEQNQKLMDVDESAVKDTKETENSRKRRRSCVTDTPVQDNTANEKK 41
+K +D +D EQ K+ D D++ + +++ + + D P++D E+K
Sbjct: 136 DKIEEDDKIDEDNKVEQEDKV-DEDKTVEESSEKKAEVEVEEKPDINDVPMEDIQQVEEK 194
Query: 40 KRVDDEK 20
DDE+
Sbjct: 195 IVQDDEE 201
>At3g28030.1 68416.m03499 UV hypersensitive protein (UVH3) /
DNA-repair protein, putative identical to UV
hypersensitive protein [Arabidopsis thaliana]
gi|13649704|gb|AAK37472; similar to Swiss-Prot:P14629
DNA-repair protein complementing XP-G cells homolog
(Xeroderma pigmentosum group G complementing protein
homolog) [Xenopus laevis]
Length = 1479
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -1
Query: 142 SAVKDTKETENSRKRRRSCVTDTPVQDNTANEKKKRVDDEKSDKKTK 2
S V D E RKR + V +DN ++K + +EK K K
Sbjct: 1213 SDVADHTLQEGPRKRNKKKVAPHETEDNNTSDKDSPIANEKVKNKRK 1259
>At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF05178:
Krr1 family
Length = 638
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = -1
Query: 244 EDLLGQPCNKTNDDINDSKDELKEQNQKLMDVDESAVKDTKETENSRKRRR 92
E +L N D + +DE +E++++ +VDE KE E RKR+R
Sbjct: 428 EKVLKHKENMLGIDEEEEEDEEEEEDEEEEEVDEE-----KEAEGKRKRKR 473
>At2g45520.1 68415.m05661 expressed protein
Length = 205
Score = 27.9 bits (59), Expect = 6.4
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 14/87 (16%)
Frame = -1
Query: 220 NKTNDDINDSKDELKEQNQKLMDVD------ESAVKDTKETENSRKRRRSCVTDTPVQDN 59
N T+ +DS ++ E+ +KL + ES D+ + +KR+R+ +TD ++
Sbjct: 44 NYTSPSPHDSTKQVVEKKEKLKKAEVVVPATESDGDDSVVEKKKKKRKRNQMTDLRFENE 103
Query: 58 TA--------NEKKKRVDDEKSDKKTK 2
A E+KK+ + K KK K
Sbjct: 104 LAEIDGRSKRKERKKKYWEAKKQKKNK 130
>At2g31850.1 68415.m03889 expressed protein
Length = 113
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = +2
Query: 521 SCLDPSPSTGSNLWPAPRP 577
SC P STGSN PAP P
Sbjct: 74 SCSSPDSSTGSNSVPAPVP 92
>At2g12875.1 68415.m01402 hypothetical protein
Length = 325
Score = 27.9 bits (59), Expect = 6.4
Identities = 20/84 (23%), Positives = 37/84 (44%)
Frame = -1
Query: 262 Q*QSEAEDLLGQPCNKTNDDINDSKDELKEQNQKLMDVDESAVKDTKETENSRKRRRSCV 83
Q +SE E+ + + NDD +S ++ + + S+ + K E +
Sbjct: 128 QEKSEEEESEEEEKEEGNDDGEESSNDSTTTEEPSSTEEPSSSEQNKAIEGGGTEE-PIL 186
Query: 82 TDTPVQDNTANEKKKRVDDEKSDK 11
TPV + EK + ++EKS+K
Sbjct: 187 ALTPVLEAVEEEKSYKNEEEKSEK 210
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 27.5 bits (58), Expect = 8.4
Identities = 15/65 (23%), Positives = 35/65 (53%)
Frame = -1
Query: 196 DSKDELKEQNQKLMDVDESAVKDTKETENSRKRRRSCVTDTPVQDNTANEKKKRVDDEKS 17
+ K + K++N+K D D+ + E E +K++++ + +T +E+ + + +E+
Sbjct: 58 EPKKKKKKKNKKRGDTDDGEDEAVAEEEPKKKKKKN--KKLQQRGDTNDEEDEVIAEEEE 115
Query: 16 DKKTK 2
KK K
Sbjct: 116 PKKKK 120
>At5g53440.1 68418.m06641 expressed protein
Length = 1181
Score = 27.5 bits (58), Expect = 8.4
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = -1
Query: 220 NKTNDDINDSKDELKEQNQKLMDVDESAVKDTKET--ENSRKRRRSCVTDTPVQDNTANE 47
N +DD +S + K ++K DE ++TK++ ++ K R S ++ D E
Sbjct: 89 NGKDDDKGESSKKTKVSSEKSRKRDEGDGEETKKSSGKSDGKHRESSRRESKDVD---KE 145
Query: 46 KKKRVDDEKSDK 11
K ++ + KSDK
Sbjct: 146 KDRKYKEGKSDK 157
>At5g48600.1 68418.m06011 structural maintenance of chromosomes
(SMC) family protein similar to SP|P50532 Chromosome
assembly protein XCAP-C {Xenopus laevis}; contains Pfam
profiles PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1241
Score = 27.5 bits (58), Expect = 8.4
Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = -1
Query: 190 KDELKEQNQKLMDVDESAVKDTKETENSRKRRRSCVTDTP-VQDNTANEKKKRVDDEKSD 14
+++LK QK+ +++ KD+ + + K P +Q+N +K +D+EK
Sbjct: 343 REDLKHVKQKIKKLEDKLEKDSSKIGDMTKESEDSSNLIPKLQENIPKLQKVLLDEEKKL 402
Query: 13 KKTK 2
++ K
Sbjct: 403 EEIK 406
>At5g19510.1 68418.m02324 elongation factor 1B alpha-subunit 2
(eEF1Balpha2) identical to elongation factor 1B
alpha-subunit [Arabidopsis thaliana] GI:6686821
Length = 224
Score = 27.5 bits (58), Expect = 8.4
Identities = 19/57 (33%), Positives = 32/57 (56%)
Frame = -1
Query: 211 NDDINDSKDELKEQNQKLMDVDESAVKDTKETENSRKRRRSCVTDTPVQDNTANEKK 41
+DD++ DE +E+ +K + E+A KDTK+ + S K S + D D+ + KK
Sbjct: 100 DDDMDLFGDETEEE-KKAAEEREAAKKDTKKPKESGK--SSVLMDVKPWDDETDMKK 153
>At3g57930.1 68416.m06457 expressed protein
Length = 141
Score = 27.5 bits (58), Expect = 8.4
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Frame = -1
Query: 232 GQPCNKTNDDINDSKDELK---EQNQKLMDVDESAVKDTKETENSRKRRR---SCVTDTP 71
G+P D+ + ++ +K E+ K D + S TEN RKR++ S ++
Sbjct: 34 GRPQKPVKDEEEEEEELVKKTDEEEDKDDDTNGSVTSKENVTENGRKRKKPVESKESNIT 93
Query: 70 VQDNTANEKKKRVDDEKS 17
++N K D KS
Sbjct: 94 EEENGVGSKSSTEDSMKS 111
>At3g18100.2 68416.m02302 myb family transcription factor (MYB4R1)
contains Pfam profile: PF00249 Myb-like DNA-binding
domain
Length = 634
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = -1
Query: 211 NDDINDSKDELKEQNQKLMDVDESAVKDTKETENSRKRRRSCVTDTPVQDNTANEKKKR 35
+D+I D+ E +Q +K V E+ V + + +R + D +QDN ++K+R
Sbjct: 542 HDEIQDNAKEKPKQRRK--SVAET-VCENEPNNGGEERMLALECDNEIQDNAKEKRKRR 597
>At3g18100.1 68416.m02301 myb family transcription factor (MYB4R1)
contains Pfam profile: PF00249 Myb-like DNA-binding
domain
Length = 847
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = -1
Query: 211 NDDINDSKDELKEQNQKLMDVDESAVKDTKETENSRKRRRSCVTDTPVQDNTANEKKKR 35
+D+I D+ E +Q +K V E+ V + + +R + D +QDN ++K+R
Sbjct: 755 HDEIQDNAKEKPKQRRK--SVAET-VCENEPNNGGEERMLALECDNEIQDNAKEKRKRR 810
>At2g38300.1 68415.m04705 myb family transcription factor
Length = 299
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -2
Query: 375 MIPSFEGEIRVTVKDKSPNTTKDKSRTNSKCSKNSTNGSDKAKQKI 238
MIPS EG + +++ +++ SK S NST K K+
Sbjct: 1 MIPSMEGGGKTNREEEEEEEEEEEEGEESKVSSNSTVEESDKKTKV 46
>At2g13540.1 68415.m01493 mRNA cap-binding protein (ABH1) identical
to mRNA cap binding protein [Arabidopsis thaliana]
GI:15192738; contains Pfam profile PF02854: MIF4G
domain; identical to cDNA nuclear cap-binding protein
CBP80 GI:8515770
Length = 848
Score = 27.5 bits (58), Expect = 8.4
Identities = 18/76 (23%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = -1
Query: 241 DLLGQPCNKTNDDINDSKDELKEQNQKLMDVDESAVKDTKETENSRKRRRSCVTDTPV-Q 65
++LG NKT + I+D + ++ + ++ ++++ E E + + + S V PV
Sbjct: 631 EILGNALNKTYNRISDLRKDISNITKNVLVAEKASANARVELE-AAESKLSLVEGEPVLG 689
Query: 64 DNTANEKKKRVDDEKS 17
+N A K+ + EK+
Sbjct: 690 ENPAKMKRLKSTVEKT 705
>At1g74250.1 68414.m08599 DNAJ heat shock N-terminal
domain-containing protein contains Pfam domains PF00226:
DnaJ domain and PF00096: Zinc finger, C2H2 type
Length = 630
Score = 27.5 bits (58), Expect = 8.4
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = -1
Query: 193 SKDELKEQNQKLMDVDESAVKDT-KETENSRKRRRSCVTDTPVQDNTANEKKKRVDDEKS 17
S+ ++E+N+K + DT + K+R V D V+ N EKKK + E+
Sbjct: 200 SRRMMEEENKKSRKKAKREYNDTVRGLAEFVKKRDKRVIDMLVKKNAEMEKKKEEERERK 259
Query: 16 DKKTK 2
K K
Sbjct: 260 KKMEK 264
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,632,261
Number of Sequences: 28952
Number of extensions: 326024
Number of successful extensions: 1552
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 1419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1543
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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