Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0108
         (673 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6LIU1 Cluster: NhaP-type Na+/H+ and K+/H+ antiporter; ...    38   0.17 
UniRef50_A6DAX1 Cluster: Generic methyltransferase; n=3; Epsilon...    36   0.89 
UniRef50_Q8PWE5 Cluster: Methyltransferase; n=1; Methanosarcina ...    35   2.1  

>UniRef50_A6LIU1 Cluster: NhaP-type Na+/H+ and K+/H+ antiporter;
           n=1; Parabacteroides distasonis ATCC 8503|Rep: NhaP-type
           Na+/H+ and K+/H+ antiporter - Parabacteroides distasonis
           (strain ATCC 8503 / DSM 20701 / NCTC11152)
          Length = 695

 Score = 38.3 bits (85), Expect = 0.17
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = +2

Query: 284 RTMLDFSGNINPDYVQLIFIPILSMVTKFRSETYL*RPSIIKKTIQMV 427
           ++ +DF+GN NPD +  IF+PIL     +  + ++ R ++   TI  V
Sbjct: 61  KSSIDFAGNANPDMILYIFLPILIFDAAYELDVHIFRKTLTNATILSV 108


>UniRef50_A6DAX1 Cluster: Generic methyltransferase; n=3;
           Epsilonproteobacteria|Rep: Generic methyltransferase -
           Caminibacter mediatlanticus TB-2
          Length = 300

 Score = 35.9 bits (79), Expect = 0.89
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = +1

Query: 217 ERLPFLDQKFEVIYCM*FVYPTKDNVGLLRQYKSRL 324
           E +P+  +KF+VI+CM  +Y  KD + +L+  K+ L
Sbjct: 161 EHIPYYHKKFDVIFCMGVLYHRKDPIDMLKTLKAGL 196


>UniRef50_Q8PWE5 Cluster: Methyltransferase; n=1; Methanosarcina
           mazei|Rep: Methyltransferase - Methanosarcina mazei
           (Methanosarcina frisia)
          Length = 312

 Score = 34.7 bits (76), Expect = 2.1
 Identities = 20/72 (27%), Positives = 34/72 (47%)
 Frame = +1

Query: 187 CLFLRTSTSTERLPFLDQKFEVIYCM*FVYPTKDNVGLLRQYKSRLCSIDIYPDLKHGYK 366
           C F R  T    LPF DQ F++++C   ++   D   LL +   R+CS +    +K    
Sbjct: 130 CYFERVITDCTVLPFKDQSFDIVFCKETLHHINDPKSLLDEI-WRVCSPNGLIIIKEPCV 188

Query: 367 IQIRNIFVKALN 402
             +  +F+  +N
Sbjct: 189 SSLLKLFITKIN 200


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 621,924,175
Number of Sequences: 1657284
Number of extensions: 11770761
Number of successful extensions: 24341
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24337
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51652897375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)