Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0108
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    25   7.5  
SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi...    25   7.5  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    25   9.9  

>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 15/52 (28%), Positives = 30/52 (57%)
 Frame = -2

Query: 525 QLTIRCPYAHLSISASAYKVYFIWF*HINH*VTTICMVFLIIEGLYKYVSDL 370
           Q T++   + +S S  A +  FI+F   ++  T +C++ L I+G+   V+D+
Sbjct: 83  QSTVKIILSGISDSLIAAENVFIFFIEFSY-GTYLCLIQLAIDGILDAVADV 133


>SPAC688.06c |slx4||structure-specific endonuclease subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 236 TKNLK*FTVCNLYIQPRTMLDFSG 307
           T N+K FT C    + RT+L+++G
Sbjct: 242 TDNIKEFTSCEFNDRSRTLLNYAG 265


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 157 IDFKRIRLVFCLFLRTSTSTERLPFLD 237
           +DF+ +  V+ LFLRT +   RL FLD
Sbjct: 336 VDFEILGTVY-LFLRTPSILNRLNFLD 361


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,610,392
Number of Sequences: 5004
Number of extensions: 50928
Number of successful extensions: 94
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)