Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0108
         (673 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021466-1|CAA16282.1|  308|Caenorhabditis elegans Hypothetical ...    31   0.99 
AF016679-1|AAB66162.1|  539|Caenorhabditis elegans Hypothetical ...    29   2.3  
U58754-8|AAK72082.1|  325|Caenorhabditis elegans Serpentine rece...    28   6.9  

>AL021466-1|CAA16282.1|  308|Caenorhabditis elegans Hypothetical
           protein VF36H2L.1 protein.
          Length = 308

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 20/58 (34%), Positives = 26/58 (44%)
 Frame = -2

Query: 645 TRILYIRLLDIVIRKLGSFNGRQAGLGSAPGSADVHGRR*QLTIRCPYAHLSISASAY 472
           +R+ Y  LL    R L     RQ  +  APG +D+H  R  L + C      ISA  Y
Sbjct: 78  SRVAYFMLLKKAQRGLNKIT-RQGQISVAPGVSDLHNARHMLALVCGLGMGVISALFY 134


>AF016679-1|AAB66162.1|  539|Caenorhabditis elegans Hypothetical
           protein T28C12.5 protein.
          Length = 539

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +2

Query: 536 PWTSALPGAEPKPACLPLKLPNLRITISNNLIYKILVSQMVVTHT 670
           PW  ALP A     CL L +   +I    N I K+LVS+ ++  T
Sbjct: 84  PWDKALPSANQSEDCLYLNVFAPKIREDKN-ICKLLVSREIIVVT 127


>U58754-8|AAK72082.1|  325|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 13 protein.
          Length = 325

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -3

Query: 296 PTLSLVGYTNYIQ*ITSNFWSKNGSRSVEVEVLRKRQKTKRIRLKSIFILY 144
           PT   VGY+  +   + + WS   S S    +L K   T+ + +  IF++Y
Sbjct: 86  PTTCYVGYSLMLHCFSHSLWSLLLSFSYRCYILYKPAPTRPVLVLIIFLIY 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,319,277
Number of Sequences: 27780
Number of extensions: 280898
Number of successful extensions: 456
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)