Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0105
         (550 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    53   5e-06
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    44   0.002
UniRef50_Q4D9R4 Cluster: Protein kinase, putative; n=2; Trypanos...    36   0.47 
UniRef50_Q12385 Cluster: Putative serine protease ICT1; n=2; Sac...    33   3.3  
UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-...    33   4.4  
UniRef50_Q6CVG4 Cluster: Similar to sp|P38065 Saccharomyces cere...    33   5.8  
UniRef50_Q6QI15 Cluster: LRRGT00193; n=1; Rattus norvegicus|Rep:...    32   7.6  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 52.8 bits (121), Expect = 5e-06
 Identities = 27/48 (56%), Positives = 29/48 (60%)
 Frame = -3

Query: 191 PLSFSPDLLSGSRFRSGGRFCEARLLLGFVLATSSGLSPVSSPTKVRV 48
           P+ F       SRFRS GRFCEA LLLG VLA S  LSP   P + RV
Sbjct: 74  PMKFLAGSSQSSRFRSDGRFCEALLLLGLVLANSLRLSPYELPNRPRV 121



 Score = 51.2 bits (117), Expect = 2e-05
 Identities = 34/86 (39%), Positives = 45/86 (52%)
 Frame = -2

Query: 324 PKHVISDPPDPLTVLLGTSSTGHLLVEPVACDEGLDE*INSQTQPTEFLAGSSQWVAFPI 145
           P HV+SDP D L+VLL  SSTG+       C   +    N +TQP +FLAGSSQ   F  
Sbjct: 37  PNHVLSDPRDSLSVLLDLSSTGY-------CPCRVRRATNPKTQPMKFLAGSSQSSRFRS 89

Query: 144 RW*ILRSTALARVRVSNIVRFEPREL 67
                 +  L  + ++N +R  P EL
Sbjct: 90  DGRFCEALLLLGLVLANSLRLSPYEL 115


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 44.0 bits (99), Expect = 0.002
 Identities = 21/36 (58%), Positives = 26/36 (72%)
 Frame = -3

Query: 239 SLATKGSTSKLTLRHSPLSFSPDLLSGSRFRSGGRF 132
           SL T G +++   R  PLSFSPDLLSGSRFR+G  +
Sbjct: 380 SLKTTGHSTENEHRCCPLSFSPDLLSGSRFRTGAEY 415


>UniRef50_Q4D9R4 Cluster: Protein kinase, putative; n=2; Trypanosoma
            cruzi|Rep: Protein kinase, putative - Trypanosoma cruzi
          Length = 1816

 Score = 36.3 bits (80), Expect = 0.47
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = -3

Query: 272  LQAPVTFSSNPSLATKGSTSKLTLRHSPLSFSP---DLLSGSRFRSGGRFCEA 123
            +  P+  S   S+AT    + L+L  +PLSF+P   D  S   F+ GGR C A
Sbjct: 1111 ISCPIVVSRRASIATHVGLASLSLSLAPLSFNPPNSDRSSLPPFKEGGRVCSA 1163


>UniRef50_Q12385 Cluster: Putative serine protease ICT1; n=2;
           Saccharomyces cerevisiae|Rep: Putative serine protease
           ICT1 - Saccharomyces cerevisiae (Baker's yeast)
          Length = 394

 Score = 33.5 bits (73), Expect = 3.3
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -2

Query: 459 PEVIERVVLLVPLR*SGSTREPSHMWPPVTTFPILRTE 346
           P+ IE++ L+ PL    S    +H W P TT+P+  T+
Sbjct: 197 PDSIEKLCLISPLGVENSIHAITHKWEPNTTYPLTFTD 234


>UniRef50_Q9XXW0 Cluster: Endonuclease and reverse
           transcriptase-like protein; n=9; cellular organisms|Rep:
           Endonuclease and reverse transcriptase-like protein -
           Bombyx mori (Silk moth)
          Length = 960

 Score = 33.1 bits (72), Expect = 4.4
 Identities = 12/22 (54%), Positives = 18/22 (81%)
 Frame = -2

Query: 327 RPKHVISDPPDPLTVLLGTSST 262
           RP+HV++DP DP+T+ L T S+
Sbjct: 915 RPRHVLTDPSDPITLALDTFSS 936


>UniRef50_Q6CVG4 Cluster: Similar to sp|P38065 Saccharomyces
           cerevisiae YBL037w APL3 AP-2 complex subunit; n=1;
           Kluyveromyces lactis|Rep: Similar to sp|P38065
           Saccharomyces cerevisiae YBL037w APL3 AP-2 complex
           subunit - Kluyveromyces lactis (Yeast) (Candida
           sphaerica)
          Length = 952

 Score = 32.7 bits (71), Expect = 5.8
 Identities = 26/74 (35%), Positives = 39/74 (52%)
 Frame = -3

Query: 275 VLQAPVTFSSNPSLATKGSTSKLTLRHSPLSFSPDLLSGSRFRSGGRFCEARLLLGFVLA 96
           VLQ+P +  + PS      T ++T R         LLS S+F+ GG++C  RL +G+ + 
Sbjct: 773 VLQSPDSKLA-PSNGRTSYTFEITTRFPFPQEHASLLS-SQFKCGGQYCSHRLKIGYTIL 830

Query: 95  TSSGLSPVSSPTKV 54
             S LSP  S  K+
Sbjct: 831 --STLSPRISEIKL 842


>UniRef50_Q6QI15 Cluster: LRRGT00193; n=1; Rattus norvegicus|Rep:
           LRRGT00193 - Rattus norvegicus (Rat)
          Length = 396

 Score = 32.3 bits (70), Expect = 7.6
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = -1

Query: 532 QGLQMCQFSSPRKLACFNVGLLAGARSHRTCSVIGTTSIKRLDTRTLSYVAAGN 371
           Q + + + S P     F   +L     HRTC   GT +  R +T T  Y+  GN
Sbjct: 335 QNVTIARSSLPSTKGHFKAEMLHTRVGHRTCLGRGTNAALRTETGTYVYITGGN 388


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 519,409,176
Number of Sequences: 1657284
Number of extensions: 10470203
Number of successful extensions: 25646
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 24908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25639
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 35822246242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)