Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0105
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    27   1.8  
SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomy...    27   1.8  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   3.2  
SPCC645.03c |isa1||iron-sulfur protein Isa1|Schizosaccharomyces ...    25   5.6  

>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = -3

Query: 329 VAQNTSSRILLIH*RCF*VLQAPVTFSSNPSLATKGSTSKLTLRHSPLSFSPDLL 165
           ++QN    +L      F  +++PVT + N +  T+G  +KL++  S  S S   L
Sbjct: 22  LSQNKFEELLDARIAAFQQIESPVTGTLNSNKTTEGEEAKLSIYDSSHSISKSQL 76


>SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 215

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -3

Query: 251 SSNPSLATKGSTSKLTLRHSPLSFSPDLLSGSRFRSGGRFCEARLLL 111
           SS+ +L T+ +TS+    H   +     L+G+     GRFC A  L+
Sbjct: 134 SSDKALLTRPATSRRRCCHPTCTRITLRLAGNCLHCNGRFCAAHRLM 180


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 321 KHVISDPPDPLTVLLGTSSTGHL 253
           +H++ +PP PLTVL      GH+
Sbjct: 499 RHILDNPPKPLTVLDIYFQIGHV 521


>SPCC645.03c |isa1||iron-sulfur protein Isa1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 190

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
 Frame = +3

Query: 327 DRPLLSILSAGSGM*LPAATYERVLVSSRFI---EVVPIT-LHVR*LRAPASKPTLKQAS 494
           + P L   +AGSG   P    ER + S+RF+    V+ +T L V  L+   S  ++K   
Sbjct: 47  ETPSLKPSAAGSGSTAPKPVTEREIASTRFMPRKNVIKLTPLAVEHLKKMQSSASMKGKM 106

Query: 495 FR 500
            R
Sbjct: 107 LR 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,106,762
Number of Sequences: 5004
Number of extensions: 41618
Number of successful extensions: 105
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)