Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0105
(550 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0222 - 21034183-21035920,21036484-21036687,21037323-21037345 31 0.80
01_06_1202 + 35396165-35396260,35396398-35396549,35396694-353969... 29 1.8
11_01_0432 + 3313060-3313107,3313610-3313753,3314510-3314662,331... 29 2.4
01_01_0769 - 5944910-5946613,5946768-5946887,5948243-5948300,594... 29 2.4
05_04_0340 - 20404703-20404771,20404908-20405093,20405191-204052... 29 3.2
02_03_0074 + 14781763-14784191,14784888-14784978,14785180-147852... 29 3.2
07_01_0050 - 402808-402819,402920-402922,402999-403010,403832-40... 28 4.3
05_04_0376 - 20754386-20755392,20755683-20756320,20756433-207566... 28 5.6
01_06_1550 + 38191957-38192054,38193084-38193284,38193456-381940... 28 5.6
04_04_0753 - 27797298-27797547,27797765-27797951,27798040-277981... 27 7.5
04_03_0376 + 15105874-15106230,15109207-15111573 27 7.5
>02_04_0222 - 21034183-21035920,21036484-21036687,21037323-21037345
Length = 654
Score = 30.7 bits (66), Expect = 0.80
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +1
Query: 346 FCPQDRECSYRRPHMRGFSCRAALSKWYQ*H 438
FC +D +C++ P +R F+ A ++W++ H
Sbjct: 535 FCFRDYDCNWNSPQLRQFASDEAHARWWRAH 565
>01_06_1202 +
35396165-35396260,35396398-35396549,35396694-35396938,
35397044-35398350
Length = 599
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -1
Query: 493 LACFNVGLLAGARSHRTCSVIGTTSIKRLDTRTLSYVAAGNYIPDP 356
L+C + LLAGA H ++ T +KRL +T + + +P P
Sbjct: 13 LSCSVLALLAGAEVHHHEFIVQETPVKRL-CKTHNVITVNGQLPGP 57
>11_01_0432 +
3313060-3313107,3313610-3313753,3314510-3314662,
3315283-3315792,3315888-3317423,3317505-3317573,
3317742-3317807,3318517-3318640,3319464-3319690
Length = 958
Score = 29.1 bits (62), Expect = 2.4
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = -3
Query: 236 LATKGSTSKLTLRHSPLSFSPDLLSGSRFRSGGRFCEARLLLGFVLATSSGLSPVSS 66
L TKG +T+ H P+ FSP S G E+ L + S GL P+S+
Sbjct: 203 LETKGKRLSVTVTHFPMIFSPISSRTFVLPSEGTMAESCLSNHHEDSLSPGLPPIST 259
>01_01_0769 -
5944910-5946613,5946768-5946887,5948243-5948300,
5948544-5948627,5949356-5949456,5949562-5949745,
5950746-5950774,5951134-5951226
Length = 790
Score = 29.1 bits (62), Expect = 2.4
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Frame = +2
Query: 275 PKSTVSGSGGS----EMTCFGRPSTAFHSVRRIGNVVTGGHI*EGSRVEPLYRSGTNNTT 442
P+++V + G+ ++T G + S ++ NVV+ G G R L R ++ T
Sbjct: 293 PQASVQSANGNLNSKQVTAAGNGTVGTLSAKQYVNVVSQGSSGSGRRFTVLTRQTASSDT 352
Query: 443 RSMTSGSSKQANIKASK 493
RS +G A+ + K
Sbjct: 353 RSKATGQVGNASSDSQK 369
>05_04_0340 -
20404703-20404771,20404908-20405093,20405191-20405292,
20405400-20405464,20405551-20405631,20405983-20406055,
20406147-20406248,20406437-20406556,20406690-20406800,
20406889-20406960,20407228-20407341,20407423-20407521,
20408472-20408849
Length = 523
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 439 SVIGTTSIKRLDTRTLSYVAAGNYIPDPADRMESSGR 329
+V G ++ +D R SYV G P A R+ SGR
Sbjct: 62 AVDGVLCLEEVDGRKWSYVVEGGASPGKAGRVSGSGR 98
>02_03_0074 +
14781763-14784191,14784888-14784978,14785180-14785230,
14785882-14785947,14786509-14786610
Length = 912
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 404 VEPLYRSGTNNTTRSMTSGSSKQANIKASKFPWGRKLTHLKSL 532
++PLY ++G K AN ++S+ W L+ LKSL
Sbjct: 681 LDPLYAQAVQVRQPDPSTGKMKVANKQSSRLVWETCLSELKSL 723
>07_01_0050 -
402808-402819,402920-402922,402999-403010,403832-404467
Length = 220
Score = 28.3 bits (60), Expect = 4.3
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -1
Query: 538 RSQGL-QMCQFSSPRKLACFNVGLLAGARSHRTCSVIG 428
R+QG M SSP + C N+ AG + T +VIG
Sbjct: 88 RAQGFYMMSSLSSPTLMMCVNLYFTAGENNGSTIAVIG 125
>05_04_0376 -
20754386-20755392,20755683-20756320,20756433-20756627,
20757730-20757795,20757942-20758007,20758402-20758445
Length = 671
Score = 27.9 bits (59), Expect = 5.6
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 349 CPQDRECSYRRPHMRGFSCRAALSKWYQ*H 438
C +D +C++ P MR F+ A ++W++ H
Sbjct: 560 CFRDYDCNWNIPLMREFASDVAHARWWKVH 589
>01_06_1550 +
38191957-38192054,38193084-38193284,38193456-38194090,
38194398-38195419
Length = 651
Score = 27.9 bits (59), Expect = 5.6
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +1
Query: 349 CPQDRECSYRRPHMRGFSCRAALSKWYQ*H 438
C +D +C++ P +R F+ A ++W++ H
Sbjct: 535 CFRDYDCNWNNPILREFASDVAHARWWKVH 564
>04_04_0753 -
27797298-27797547,27797765-27797951,27798040-27798113,
27798719-27798949,27799047-27799133,27799244-27799434
Length = 339
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +2
Query: 326 RPSTAFHSVRRIGNVVTGGHI*EGSRVEPLYR 421
+ S+A+H +IG +V+GG++ G E LY+
Sbjct: 307 KQSSAWHESSKIGIIVSGGNVDLGVLWESLYK 338
>04_03_0376 + 15105874-15106230,15109207-15111573
Length = 907
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 386 CGRR*LHSRSCGQNGKQWTVAQNTSSRILL 297
CG +RSC QNG+ W Q+ +I+L
Sbjct: 880 CGHE--FTRSCKQNGENWEKIQHILEKIIL 907
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,450,143
Number of Sequences: 37544
Number of extensions: 308806
Number of successful extensions: 822
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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