Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0105
         (550 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43455| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_41695| Best HMM Match : Spectrin (HMM E-Value=0)                    27   7.6  
SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_43455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 924

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 22/51 (43%), Positives = 28/51 (54%)
 Frame = +1

Query: 358 DRECSYRRPHMRGFSCRAALSKWYQ*HYTFDDFGLQQASQH*SKQVSVGKK 510
           + +CS +RP  + F+C A L  W Q H    D   Q  SQH  KQ+S GKK
Sbjct: 646 EMDCSDKRPGNQ-FTC-ALLKYWSQEHAR--DLA-QLVSQHVCKQLSGGKK 691


>SB_41695| Best HMM Match : Spectrin (HMM E-Value=0)
          Length = 2322

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
 Frame = -2

Query: 339  AVDGRPKHVISDPPDPLTVL-------LGTSSTGHLLVEPVACDEGLDE*INSQTQPTE 184
            AV GR K  +   P P ++L       L T  TGHLL E    ++ + + +  +T+P E
Sbjct: 1961 AVIGRLKTDLHGLPPPPSILRYFVKLPLSTEHTGHLLGEAAVIEQEMKKRMKRKTRPKE 2019


>SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1277

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +2

Query: 326 RPSTAFHSVRRIGNVVTGGHI*EGSRVEPLYRSGTNNTTRSMTSGSS 466
           R S    S+ R  +  T GH    S     +   ++NTTRS+T  SS
Sbjct: 690 RSSNTTRSLTRRSSNTTRGHTRRSSNTTRSHTRRSSNTTRSLTRRSS 736


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,192,575
Number of Sequences: 59808
Number of extensions: 336697
Number of successful extensions: 721
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)