Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0105
         (550 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071047-1|AAL48669.1|  327|Drosophila melanogaster RE13606p pro...    29   3.1  
AE014296-2122|AAF49936.1|  327|Drosophila melanogaster CG10335-P...    29   3.1  
AE014297-3205|AAF56038.1| 1638|Drosophila melanogaster CG6954-PA...    29   5.5  
AF186024-1|AAF28462.1|  989|Drosophila melanogaster RAW protein.       28   9.6  
AE014134-1558|AAF52706.2|  989|Drosophila melanogaster CG12437-P...    28   9.6  

>AY071047-1|AAL48669.1|  327|Drosophila melanogaster RE13606p
           protein.
          Length = 327

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
 Frame = -1

Query: 454 SHRTCSVIGTT------SIKRLDTRTLSYVAAGNYIPDPADRMESSGRSPK 320
           SH  C ++G T      SIKR+    ++Y  AG +I  P+D M++  ++ K
Sbjct: 126 SHGHCGLLGETGLENGPSIKRIAEIAVAYAKAGAHIVAPSDMMDNRVKAIK 176


>AE014296-2122|AAF49936.1|  327|Drosophila melanogaster CG10335-PA
           protein.
          Length = 327

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
 Frame = -1

Query: 454 SHRTCSVIGTT------SIKRLDTRTLSYVAAGNYIPDPADRMESSGRSPK 320
           SH  C ++G T      SIKR+    ++Y  AG +I  P+D M++  ++ K
Sbjct: 126 SHGHCGLLGETGLENGPSIKRIAEIAVAYAKAGAHIVAPSDMMDNRVKAIK 176


>AE014297-3205|AAF56038.1| 1638|Drosophila melanogaster CG6954-PA
            protein.
          Length = 1638

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 20/70 (28%), Positives = 29/70 (41%)
 Frame = -3

Query: 266  APVTFSSNPSLATKGSTSKLTLRHSPLSFSPDLLSGSRFRSGGRFCEARLLLGFVLATSS 87
            AP    S+ SL +        L H PL  +    S +  R GG + ++ L     L    
Sbjct: 1429 APYLAGSSVSLRSGNGAFATDLEHKPLKPATKAASSANLREGGPYLKSTLA---ELRAVG 1485

Query: 86   GLSPVSSPTK 57
            G  PV+S +K
Sbjct: 1486 GEEPVASTSK 1495


>AF186024-1|AAF28462.1|  989|Drosophila melanogaster RAW protein.
          Length = 989

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 422 SGTNNTTRSMTSGSSKQANIKASKFPWGRKLTHLKS 529
           + +NNTT S  S +S   NIK +K   G+ +  L+S
Sbjct: 25  NSSNNTTISTASNASNNNNIKRAKKLSGQNIIKLRS 60


>AE014134-1558|AAF52706.2|  989|Drosophila melanogaster CG12437-PA,
           isoform A protein.
          Length = 989

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 422 SGTNNTTRSMTSGSSKQANIKASKFPWGRKLTHLKS 529
           + +NNTT S  S +S   NIK +K   G+ +  L+S
Sbjct: 25  NSSNNTTISTASNASNNNNIKRAKKLSGQNIIKLRS 60


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,495,765
Number of Sequences: 53049
Number of extensions: 492397
Number of successful extensions: 1247
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1247
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2089831299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)